👤 Ryjul W. Stokes

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Johannes Karges, Ryjul W. Stokes, Seth M. Cohen · 2022 · ACS Medicinal Chemistry Letters · ACS Publications · added 2026-04-20
Computational modeling of inhibitors for metalloenzymes in virtual drug development campaigns has proven challenging. To overcome this limitation, a technique for predicting the binding pose of metal- Show more
Computational modeling of inhibitors for metalloenzymes in virtual drug development campaigns has proven challenging. To overcome this limitation, a technique for predicting the binding pose of metal-binding pharmacophores (MBPs) is presented. Using a combination of density functional theory (DFT) calculations and docking using a genetic algorithm, inhibitor binding was evaluated in silico and compared with inhibitor-enzyme cocrystal structures. The predicted binding poses were found to be consistent with the cocrystal structures. The computational strategy presented represents a useful tool for predicting metalloenzyme-MBP interactions. Show less
no PDF DOI: 10.1021/acsmedchemlett.1c00584
bioinorganic dft enzyme enzyme inhibition genetic algorithm inhibition medicinal chemistry metal