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Selective Inhibition of Lysine-Specific Demethylase 5A (KDM5A) Using a Rhodium(III) Complex for Triple-Negative Breast Cancer Therapy.
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Accepted Article
Title:Selective inhibition of lysine-specific demethylase 5A (KDM5A)
using a rhodium(III) complex for triple-negative breast cancer
therapy
Authors:Chung-Hang Leung, Guan-Jun Yang, Wanhe Wang, Simon
Wing Fai Mok, Chun Wu, Betty Yuen Kwan Law, Xiang-Min
Miao, Ke-Jia Wu, Hai-Jing Zhong, Chun-Yuen Wong, Vincent
Kam Wai Wong, and Dik-Lung Ma
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To be cited as: Angew. Chem. Int. Ed. 10.1002/anie.201807305
Angew. Chem. 10.1002/ange.201807305
Link to VoR: http://dx.doi.org/10.1002/anie.201807305
http://dx.doi.org/10.1002/ange.201807305
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Selective inhibition of lysine-specific demethylase 5A (KDM5A)
using a rhodium(III) complex for triple-negative breast cancer
therapy
Guan-Jun Yang,#[a] Wanhe Wang,#[b] Simon Wing Fai Mok,[c] Chun Wu,[b] Betty Yuen Kwan Law,[c]
Xiang-Min Miao[d], Ke-Jia Wu,[a]Hai-Jing Zhong,[a] Chun-Yuen Wong,[e] Vincent Kam Wai Wong,*[c] Dik-
Lung Ma,*[b] and Chung-Hang Leung*[a]
Abstract: Lysine-specific demethylase 5A (KDM5A) has recently
become a promising target for epigenetic therapy. In this study, we
designed and synthesized metal complexes bearing ligands with
reported demethylase and p27 modulating activities. The Rh(III)
complex 1 was identified as a direct, selective and potent inhibitor of
KDM5A that directly abrogate KDM5A demethylase activity via
antagonizing the KDM5A-tri-/di-methylated histone 3 protein–protein
interaction (PPI) in vitro and in cellulo. Complex 1 induced
accumulation of H3K4me3 and H3K4me2 levels in cells, causing
growth arrest at G1 phase in the triple negative breast cancer
(TNBC) cell lines, MDA-MB-231 and 4T1. Finally, 1 exhibited potent
anti-tumour activity against TNBC xenografts in an in vivo mouse
model, presumably via targeting of KDM5A and hence upregulating
p27. Moreover, complex 1 was less toxic compared with two clinical
drugs, cisplatin and doxorubicin. To our knowledge, complex 1 is the
first metal-based KDM5A inhibitor reported in the literature. We
anticipate that complex 1 may be utilized as a novel scaffold for the
further development of more potent epigenetic agents against
cancers, including TNBC.
Figure 1. Chemical structures of the cyclometallated Rh(III)
Triple negative breast cancers (TNBC) are characterized by and Ir(III) complexes 1–5 (racemates), ligands 6 and 7,
positive control 8 (CPI-455), compounds 9 and 10
aberrations in the TP53 gene, enhancement in ability of
(analogues of 6 and 7) are evaluated in this study.
migration and metastasis, and high risk of recurrence, rendering
it as a challenging target for molecular therapies.[1] Current
chemotherapeutic strategies for TNBC treatment are limited by
[a] G.-J. Yang, K.-J. Wu, H.-J. Zhong, Prof. Dr. C.-H. Leung drug resistance and serious side effects such as organ damage,
Institute of Chinese Medical Sciences and State Key Laboratory of
which increases the suffering of TNBC patients.[2] Therefore,
Quality Research in Chinese Medicine
University of Macau there is an urgent need to develop new targeted approaches to
Macao SAR (China) treat this type of cancer. Recent studies have identified a strong
E-mail: duncanleung@umac.mo association between lysine-specific demethylase 5A (KDM5A)
[b] W.-H. Wang, C. Wu, Prof. Dr. D.-L. Ma
and TNBC.[3] KDM5A belongs to the KDM5 subfamily of Jumonji
Department of Chemistry
Hong Kong Baptist University histone demethylases that removes di- and tri-methylation marks
Kowloon Tong, Hong Kong (China) from lysine 4 of histone H3.[4] KDM5A is overexpressed in breast
E-mail: edmondma@hkbu.edu.hk cancer[3a] and multiple other human cancer types, including
[c] S.W.F. Mok, B.Y.K. Law, Pro. Dr. V.K.W. Wong
glioblastoma,[5] lung,[6] and gastric[7] cancers, where it promotes
State Key Laboratory of Quality Research in Chinese Medicine,
Macau University of Science and Technology, tumorigenesis, metastasis and drug tolerance of these
Avenida Wai Long, Taipa, Macao, China cancers.[8] Several KDM5A inhibitors have been reported in
E-mail: bowaiwong@gmail.com recent years, but most lack selectivity for the enzyme over other
[d] Dr. X.-M. Miao
demethylases, which complicates the interpretation of biological
School of Life Science, Jiangsu Normal University,
Xuzhou 221116, PR China and clinical studies that make use of these compounds.[9]
[e] Dr. C.-Y. Wong
Department of Chemistry,
City University of Hong Kong, Tat Chee Avenue,
Kowloon, Hong Kong SAR, China
Supporting information for this article is given via a link at the end of the
document.
# Authors contribute equally to the work.
* Corresponding authors
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Figure 3. Thermal stabilization of KDM5A by complex 1 in
Figure 2. Inhibition of KDM5A demethylase activity in cell lysates. (A) MDA-MB-231 cell lysates were treated with
vitro was determined using a chemiluminescence assay. 1 or 8 at 1.0 or 3.0 μM. KDM5A content in the soluble
(A) Effect of complexes 1–5 (3.0 µM) on KDM5A activity. fraction was determined by Western blotting. (B)
(B) 1 inhibits KDM5A activity in a dose-dependent Densitometry analysis of KDM5A content.
manner. *P < 0.05 compared to DMSO-treated group.
ligand is important for KDM5A inhibitory activity. Consistent with
Organometallic compounds based on transition metals such this, the Rh(III) complex 3 also bearing two 2-phenylquinoline
as rhodium and iridium have emerged as promising scaffolds for C^N ligands as well as a 2,2’-bipyridine N^N ligand also showed
antitumor leads.[10] Organometallic complexes can display great powerful KDM5A antagonist activity and was only slightly less
structural diversity of geometrical shapes depending on the potent than complex 1. Additionally, the isolated ligands of the
oxidation state of their metal center, and variation of their co- Rh(III) complex 1, 4,4'-diphenyl-2,2'-bipyridine (6) and 2-
ligands.[11] With readily tunable steric and electronic phenylquinoline (7), as well as their non-heterocyclic analogues
characteristics, organic complexes can be optimized to (9 and 10) were tested for their ability to inhibit KDM5A
effectively target the active sites of proteins or enzymes through demethylase activity and p27 expression. The results showed
shape-specific interactions.[12] Anchoring bioactive ligands to a that neither the isolated ligands, 6 and 7, nor their non-
metal center is a versatile approach to generate new therapeutic heterocyclic analogues 9 and 10 displayed significant bioactivity
metal complex leads. 2,2’-Bipyridine and 2-phenylquinoline have both in vitro and in cellulo (Figures S8). These results illustrate
been reported as structural moieties for synthesizing compounds the importance of the Rh(III) center in arranging the ligands into
displaying DNA demethylase and p27KIP1 modulating activities, a structurally active conformation within the architecture of the
respectively.[13] p27, a cyclin-dependent kinase (Cdk) inhibitor organometallic complex.
regulated by KDM5A,[6] represses cell proliferation and motility, Interestingly, the Rh(III) complex 1 was much more potent
and induces apoptosis in TNBC.[14] In this study, we designed than the Ir(III) congener 4 despite having the same ligands and
and synthesized Rh(III) and Ir(III) complexes 1–5 bearing same charge. To understand this difference, the stability, redox
ligands related to 2,2’-bipyridine and 2-phenylquinoline (Figure activity, size and hydrophobicity of the two complexes were
1)[15] and explored their effect on KDM5A demethylase and p27 further studied. Complexes 1 and 4 showed similar stability in 80%
activity. The rhodium(III) complex 1 was identified as the first acetonitrile/20% aqueous buffer as monitored by UV-Vis
metal-based inhibitor of KDM5A activity that suppressed breast absorption spectroscopy (Figure S2) and 1H NMR spectroscopy
cancer cell growth in vivo. (Figure S3). Cyclic voltammetry experiments showed almost
Detailed methods for the synthesis of complexes 1, 2, 3, and 4 indistinguishable redox potentials (Figure S4), while theoretical
are described in the ESI, while complex 5 has been previously calculations showed that the two complexes had similar sizes
reported.[16] As methylated H3 peptides are known substrates for (Figure S5). However, 1 had a longer retention time than 4
KDM5A, we initially screened the complexes for their ability to (26.45 min vs. 24.55 min) in reversed phase HPLC, indicating
modulate the protein-protein interaction (PPI) between tri- that 1 is more hydrophobic. Additionally, ICP-MS results showed
methylated lysine histone 4 peptide (H3K4me3) and KDM5A in that complex 1 has significant higher cellular uptake in MDA-MB-
vitro using a chemiluminescence assay. CPI-455 (8), a reported 231 cells than complex 4 (Figure S7). As hydrophobicity is an
KDM5A inhibitor,[9b] was used as a positive control. From the important determinant of both binding activity and cellular
preliminary screening results, the Rh(III) complex 1 emerged as permeability,[18] the enhanced activity and higher intracellular
the most active candidate, with higher activity compared to the concentration of complex 1 compared to complex 4 could be due,
positive control compound 8 at 3.0 µM (Figure 2A). In a dose- at least in part, to its higher hydrophobicity.
response experiment, complex 1 inhibited KDM5A activity with To explore whether complex 1 could target KDM5A in cellulo,
an IC value of 23.2 ± 1.8 nM (Figure 2B). Moreover, complex 1 the ability of complex 1 to induce histone methylation in MDA-
50
was more potent against KDM5A activity (84.3% inhibition) MB-231 cells was investigated by Western blotting (Figure S9A).
compared to other demethylases including KDM1A (61.1% Complex 1 increased the levels of H3K4me2 (Figure S9B) and
inhibition), KDM4A (10.2% inhibition) and KDM6B (58.4% H3K4me3 (Figure S9C) without affecting the expression level of
inhibition) (Figure S1). Therefore, 1 may function as a selective KDM5A (Figure S9D). Moreover, a KDM5A knockdown assay
KDM5A inhibitor. showed that ablation of KDM5A phenocopied the
The Rh(III) complex 1, bearing two 2-phenylquinoline C^N pharmacological effects of KDM5A inhibition by complex 1
ligands and a 4,4'-diphenyl-2,2'-bipyridine N^N ligand, showed (Figure S10A-B). Both KDM5A knockdown and complex 1
higher potency than the Rh(III) complex 2, which contains the treatment induced a significant increase in H3K4me3 (Figure
same N^N ligand as 1 but bears two 2-phenylpyridine C^N S10C) and H3K4me2 (Figure S10D) levels. Moreover, KDM5A
ligands instead. This result suggests that the 2-phenylquinoline knockdown sharply reduced the cytotoxicity of 1 in MDA-MB-231
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Figure 4. Complex 1 raises p27 level by disrupting the
interaction between KDM5A and its targets. Interactions
between KDM5A and its targets H3K4me3, H3K4me2, and H3
in MDA-MB-231 cells were examined by (A) Western blotting
and (B) co-IP. MDA-MB-231 cells were treated with DMSO
and indicated concentrations of 1 or 8 for 6 h. Cell lysates Figure 5. Complex 1 exhibits antitumour effects in an in
were subjected to immunoprecipitation with the appropriate vivo mouse model. Female BALB/c mice were
antibody. (C) Effect of 1 or 8 on the binding ability of subcutaneously inoculated with 1.0×106 4T1 mouse breast
H3K4me3 to p27 promoter in MDA-MB-231 cells by ChIP- cancer cells, and injected intraperitoneally daily with
qPCR. After incubation with DMSO, 1 (3.0 μM) or 8 (3.0 μM) complex 1, cisplatin, and doxorubicin hydrochloride when
for 6 h, cells were harvested and ChIP-qPCR was performed. the tumour volume reached 60 mm3. (A) Tumour volume of
(D-F) Effect of 1 or 8 on the p27 levels in MDA-MB-231 and 4T1 tumour-bearing mice after control (vehicle), 1 (2.0 or
4T1 cells by Western blotting after 6 h treatment using the 4.0 mg/kg), cisplatin (1.5 mg/kg), and doxorubicin (Dox, 1.5
indicated concentrations of 1 and 8. *P < 0.05 compared with mg/kg) treatments (n = 6-8). (B) Representative photograph
control group. images of tumour tissues in vehicle control, complex 1-
treated groups, cisplatin- and Dox-treated groups after 9
cells (Figure S8E) compared to control cells (Figure S10F).
days. (C) Body weight of 4T1 tumour-bearing mice in
Finally, a cellular thermal shift assay (CETSA)[20] showed that
vehicle control and teatment groups. (D-E) Mean weight of
complex 1 could significantly stabilize KDM5A in MDA-MB-231
spleen and kidney from drug-treated mice after 9 days. (F-
cell lysates compared to DMSO-treated controls (ΔTm: 1: 6.5 °C
G) Survival curves of healthy C57 and BALB/C mice after
at 1.0 µM and 16.0 °C at 3.0 µM) (Figure 3), suggesting that 1
treatment with 1, cisplatin or Dox at 4 mg/kg per day (n = 6).
can engage KDM5A even in the intricate biochemical
environment of the cell lysates. Taken together, our data (H) Rhodium content in acid digests of mouse tumuor
demonstrate that 1 is a direct, potent, and selective inhibitor of tissues as determined by ICP-MS. *P < 0.05 compared to
KDM5A both in vitro and in cellulo. the vehicle-treated group analysed by t-test. (I) 1 impaired
Experiments were performed to further explore the KDM5A activity in tumour tissues.
mechanism of action and downstream effects of complex 1 in
a dose-dependent fashion in both MDA-MB-231 and 4T1 cells
regulating KDM5A activity. A co-immunoprecipitation (co-IP)
(Figure 4C-F). Additionally, complex 1 significantly increased the
assay showed that 1 impaired the interaction between KDM5A
ratio of G1 cell population and raised the expression level of p27
and H3K4me3 or H3K4me2 in cellulo, as indicated by a
in both MDA-MB-231 and 4T1 cell lines (Figure S11A-B and
reduction of KDM5A co-precipitated with H3K4me3/H3K4me2 in
Figure 4D-F). Taken together, these results suggest that 1 may
MDA-MB-231 cells (Figure 4A-B). This result could account for
function as a transcriptional modulator of p27 expression,
the ability of complex 1 to induce H3K4me3/H3K4me2
presumably via suppression of KDM5A demethylase activity.
accumulation in cellulo as described above.
KDM5A is overexpressed in many breast cancer cell lines.[3a,
p27, a cell cycle-related gene, is regulated by KDM5A.[6-7]
3b, 21] The cytotoxicity of complex 1 was assessed in different
KDM5A impairs the binding ability of H3K4me3 to the p27
breast cancer cell lines (4T1 cells, MCF-7, MDA-MB-231, and
promoter, thus downregulating its expression in cancer cells.[6-7]
MCF-10A) and normal cell lines (HEK293T and LO2) using the
Given that both KDM5A knockdown and complex 1 treatment
MTT assay. Complex 1 exhibited potent anti-proliferative activity
induced a significant increase in H3K4me3 levels (Figure S9D),
against the breast cancer cell lines, particularly the TNBC cell
we hypothesized that 1 might upregulate p27 via enhancing the
lines MDA-MB-231 (IC : 90.1 ± 8.4 nM) and 4T1 (68.2 ± 9.7
50
interaction between H3K4me3 and the p27 promoter. To verify
nM), while it showed lower cytotoxicity to the normal human cell
this hypothesis, the chromatin immunoprecipitation (ChIP) assay
lines HEK239T and LO2, and non-TNBC breast cancer cell lines
was performed. ChIP and Western blotting analysis indicated
MCF-10A and MCF-7 (Figure S12A-F). Moreover, complex 1
that 3.0 μM of 1 could increase H3K4me3 binding to the p27
significantly inhibited colony formation in both MDA-MB-231
gene promoter in MDA-MB-231 cells and raise its protein level in
(Figure S13A) and 4T1 (Figure S13B) cell lines. We consider
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that the cytotoxicity displayed by 1 could be attributed, at least in This work is supported by Hong Kong Baptist University
part, to the inhibition of KDM5A demethylase activity in cellulo. (FRG2/15-16/002), the Health and Medical Research Fund
The effect of 1 on tumour growth was further investigated in (HMRF/14130522), the Research Grants Council
an in vivo model of TNBC. Cisplatin and doxorubicin (Dox), two (HKBU/12301115, HKBU/204612, HKBU/201913,
clinical chemotherapeutic drugs for TNBC, were used as positive CityU/11228316 and CityU/11207117), the National Natural
controls. As shown in Figure 5A-B, daily intraperitoneal (IP) Science Foundation of China (21575121), the Guangdong
injection of complex 1, cisplatin or doxorubicin led to significant Province Natural Science Foundation (2015A030313816), the
inhibition of 4T1 tumour growth in vivo, with up to 35% (P < 0.05) Hong Kong Baptist University Century Club Sponsorship
and 48% (P < 0.05) inhibition of tumour growth for 2.0 mg/kg Scheme 2016, the Interdisciplinary Research Matching Scheme
and 4.0 mg/kg of 1 respectively over the course of treatment (RC-IRMS/15-16/03), the Science and Technology Development
(Figures 5A-B). Although cisplatin and Dox exhibited slightly Fund, Macao SAR (098/2014/A2), the University of Macau
more potency than complex 1 (Figures 5A-E), they also (MYRG2015-00137-ICMS-QRCM, MYRG2016-00151-ICMS-
produced significant toxicity to mouse organs (spleen and kidney) QRCM), National Natural Science Foundation of China
and caused a significant drop of body weight. In contrast, 1 was (21628502).
well tolerated in vivo as indicated by its mild effects on mouse
body weight change (Figure 5C) and organ weight change Keywords: KDM5A • epigenetics • metal complex • triple-
(Figure 5D-E) over the duration of treatment. In addition, a negative breast cancer
toxicological study showed that both cisplatin and Dox, but not
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We report herein the discovery of a Guan-Jun Yang, #[a] Wanhe Wang,#[b]
rhodium(III)-based complex 1 as an Simon Wing Fai Mok,[c] Chun Wu, [b]
inhibitor of KDM5A, an epigenetic Betty Yuen Kwan Law, [c] Xiang-Min
target for triple-negative breast Miao, [d] Ke-Jia Wu, [a]Hai-Jing Zhong,
cancer. Complex 1 inhibited the [a] Chun-Yuen Wong,[e] Vincent Kam
KDM5A-H3K4me3 interaction and Wai Wong,*[c] Dik-Lung Ma,*[b] and
suppressed proliferation of TNBC ((Insert T Graphic here)) Chung-Hang Leung*[a]
tumors in mice and may be utilized
as a novel scaffold for the further Page No. – Page No.
development of more potent
Selective inhibition of lysine-specific
epigenetic agents against cancers,
demethylase 5A (KDM5A) using a
including TNBC.
rhodium(III)-based complex for
triple-negative breast cancer therapy
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