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Rhodium(III) and iridium(III) complexes with 1,2-naphthoquinone-1-oximate as a bidentate ligand: synthesis, structure, and biological activity.
J Biol Inorg Chem (2009) 14 (Suppl 1):S33–S44
DOI 10.1007/s00775-009-0526-4
ORAL PRESENTATION
D. Small Molecules (O2) Activation
D-02
Ribonucleotide reductases—essential radical enzymes
Britt-Marie Sjöberg
Department of Molecular Biology and Functional Genomics,
Stockholm University, 10691 Stockholm, Sweden.
britt-marie.sjoberg@molbio.su.se
Ribonucleotide reductases (RNRs) catalyse the reduction of ribonucleotides to their corresponding deoxyribonucleotides, providing the
sole biological means for de novo synthesis of the building blocks of
DNA. Ribonucleotide reduction has evolved only once during evolution and all RNRs make use of a common thiyl radical-based
mechanism for catalysis. The three currently known classes of RNR
each operate under a distinct set of biochemical and environmental
conditions [1]. Class I RNRs contain a diiron center that via oxygenmediated oxidation generates a protein-based tyrosyl radical that is a
prerequisite to catalysis. Class II enzymes generate a radical via
cleavage of vitamin B12 coenzyme (50 -deoxyadenosylcobalamin).
Class III enzymes generate via S-adenosylmethionine cleavage (by
action of an activase protein) a stable protein-based glycyl radical that is
sensitive to oxygen. These differences form the basis for the classification of RNRs and result in distinct operational constraints
(anaerobicity, iron/oxygen dependence and cobalamin dependence).
While the propensity to synthesise deoxyribonucleotides is an essential
function, the operational differences suggest that the type(s) of RNR(s)
present in an organism will have an impact on the environmental conditions in which it can grow and reproduce. The effect of environmental
parameters such as iron, cobalt and oxygen availability on the biochemistry of ribonucleotide reduction will impact our understanding of
the adaptability of microorganisms to a range of environments.
Reference
1. Torrents E, Sahlin M, Sjöberg B-M (2008) The ribonucleotide
reductase family—genetics and genomics. In: Andersson KK, Uversky VN (eds) Molecular anatomy and physiology of proteins:
ribonucleotide reductase. Nova Science Publishers. pp 17-776563659 (2007)
D-03
Concerted iron and oxygen detoxification
at the tri-nuclear Fe site of bacterial ferritin
from Desulfovibrio vulgaris Hildenborough
Alice S. Pereira1, Filipe Folgosa1, Márcia Guilherme,
Américo G. Duarte, Cristina G. Timóteo1, Pedro Tavares1,
Boi Hanh Huynh2
1
Centro de Quı́mica Fina e Biotecnologia, Faculdade de Ciências e
Tecnologia, Universidade Nova de Lisboa, Quinta da Torre,
2829-516 Caparica, Portugal;
2
Department of Physics, Emory University, Atlanta, GA 30322, USA.
vhuynh@emory.edu
Ferritins are ubiquitous and can be found in practically all known
organisms ranging from bacteria, plants to vertebrates. They are
24-mers forming a hollow sphere with an inner cavity of *80 Å in
diameter. The main function of ferritin is to concentrate and oxidize the
cytotoxic Fe2+ ions and store the oxidized Fe in the inner cavity. In
anaerobic bacteria, ferritin also serves an additional function of oxygen
scavenging using molecular oxygen as the oxidant. It has been shown
that rapid oxidation of Fe2+ (ferroxidation) by H-type ferritins, found in
vertebrates, occurs at a binuclear Fe site. In this paper, we report a
spectroscopic (EPR and Mössbauer spectroscopy) and kinetic (stopped-flow absorption and rapid freeze quench technique) study of the Fe
and O2 detoxification mechanism of the bacterial ferritin from Desullfovibrio vulgaris (Hildenborough). The results indicate that, distinct
from H-type ferritins, the D. vulgaris ferritin employs a novel trinuclear Fe site for rapid oxidation of Fe2+. Also, in addition to the
peroxodiferric intermediate, which was detected in the ferroxidation
reaction of H-type ferritins, a mixed-valence FeIIFeIII intermediate and
a transient tyrosyl radical are observed in the bacterial ferritin reaction.
Involvement of a third Fe site is demonstrated unambiguously by the
absence of the FeIIFeIII intermediate and tyrosyl radical, and by the
stabilization of the peroxodiferric species in the E130A variant, in
which the third Fe site has been removed. On the basis of these data, a
minimal mechanistic scheme is proposed for the bacterial ferritin.
D-04
Formation and function of the heterodinuclear Mn(IV)/
Fe(III) cofactor of Chlamydia trachomatis
ribonucleotide reductase
Wei Jiang, Jarod M. Younker, Paul Varano, Courtney M. Krest,
Priti Singh, Jiajia Xie, Laura Dassama,
Monique Maslak-Gardner, Michael T. Green,
J. Martin Bollinger, Jr., Carsten Krebs
Department of Chemistry and Biochemistry and Molecular Biology,
The Pennsylvania State University, Pennsylvania 16802, USA.
ckrebs@psu.edu
Ribonucleotide reductases (RNRs) catalyze the reduction of ribonucleotides to deoxyribonucleotides, the precursors for DNA synthesis
and repair. This reaction is initiated by abstraction of the C30 -H bond of
the substrate by a cysteine thiyl radical (C). In a class I RNR, the C is
generated by a stable tyrosyl radical (Y), which is located in close
proximity to a non-heme diiron(III/III) cluster, via a long-distance
(*35 Å), conformationally gated, proton-coupled electron transfer
(PCET) reaction that involves several conserved, redox-active amino
acids along the PCET pathway. The recently discovered class I RNR
from Chlamydia trachomatis (Ct) has all elements of the proposed
PCET pathway conserved, except for the radical-harboring tyrosine,
which is replaced with the non-oxidizable phenylalanine (F). This
suggests that Ct RNR employs a different cofactor for generating the
C. The Y-less RNRs have been termed class Ic RNR. We recently
demonstrated that Ct RNR harbors a heterodinuclear Mn(IV)/Fe(III)
cluster to generate the C, presumably via a PCET mechanism. Thus,
the Y of a regular class I RNR is functionally replaced with a highvalent Mn(IV) site [1–3].
123
S34
References
1. Jiang W, Yun D, Saleh L, Barr EW, Xing G, Hoffart LM, Maslak
M-A, Krebs C, Bollinger JM Jr (2007) Science 316:1188–1191
2. Jiang W, Yun D, Saleh L, Bollinger JM Jr, Krebs C (2008) Biochemistry 47:13736–13744
3. Bollinger JM Jr, Jiang W, Green MT, Krebs C (2008) Current
opinion in structural biology 18:650–657
D-05
Two-site competitive inhibition in hemoglobindehaloperoxidase A from Amphitrite ornata
Stefan Franzen, Vesna de Serrano, Michael F. Davis,
Matt Thompson
Department of Chemistry, North Carolina State University,
Raleigh, NC 27695 USA. Stefan_Franzen@ncsu.edu
The enzyme dehaloperoxidase A (DHP A) from the marine worm
Amphitrite ornata is a unique hemoglobin that functions as a peroxidase, capable of converting 2,4,6-trihalophenols (2,4,6-TXP, X = B,
C, F) into the corresponding 2,6-dihalogenated quinines as well as
other products. We have determined that 4-halophenols are inhibitors
that bind in the distal pocket and displace the distal histidine (H55)
based on X-ray crystal structures with the series of inhibitors (4-XP,
X = I, Br, Cl, and F) in a unique binding interaction for a hemoglobin
will be presented. The published X-ray crystal structures [1] of DHP
A reveal that H55 is flexible and has two major conformations as
observed in the closed (Fig. 1a, PDB 2QFK) and open (Fig. 1b, PDB
3DR9) forms of Sperm Whale myoglobin (SWMb). Figure 1c shows
that binding of 4-XP inhibitor is consistent with the open conformation of H55. The 2,4,6-TXP substrates substrate affects H55 and
none of the internal residues. The distal histidine acts to stabilize
bound O2 in hemoglobins and as an acid–base catalyst in peroxidases.
Thus, in a dual-function protein the regulation of these functions is
effected by changes in the geometry of the distal histidine. Bound
J Biol Inorg Chem (2009) 14 (Suppl 1):S33–S44
phenols are simultaneously substrate and inhibitor of an enzyme and
allosteric effectors of O2 binding.
Reference
1. Chen Z, de Serrano VS, Betts L, Franzen S (2009) Distal histidine
conformational flexibility in dehaloperoxidase from Amphitrite ornata. Acta Cryst D 65:34–40
D-06
Methane hydroxylation at the iron and copper sites
of methane monooxygenase
Kazunari Yoshizawa
Institute for Materials Chemistry, Kyushu University,
Fukuoka 819-0395, Japan. kazunari@ms.ifoc.kyushu-u.ac.jp
DFT studies on methane hydroxylation by enzymes and related metaloxo species are presented. We propose a non-radical mechanism for
methane hydroxylation by soluble and particulate methane monooxygenase having the reaction by the bare FeO+ and CuO+ complexes in
mind. This mechanism is applicable when a metal-oxo species is
coordinatively unsaturated. Direct interaction between methane and a
metal active center can form a weakly bound methane complex in the
initial stages of this reaction. Subsequent C–H bond cleavage to form
an intermediate with an HO–Fe–CH3 moiety in a non-radical manner
and recombination of the resultant OH and CH3 ligands take place at a
metal active center to form a final methanol complex. Thus, this is a
non-radical, two-step reaction. The fact that methyl radical is 10–
20 kcal/mol less stable than secondary and tertiary carbon radicals
and benzyl radicals leads us to propose this mechanism.
References
Yoshizawa K (2006) Acc Chem Res 39:375–382
Yoshizawa K, Yumura T (2003) Chem Eur J 9:2347–2358
Yoshizawa K, Shiota Y (2006) J Am Chem Soc 128:9873–9881
D-08
The oxoiron(IV) reaction landscape
Lawrence Que Jr
Department of Chemistry, Center for Metals in Biocatalysis,
University of Minnesota, Minneapolis, MN 55455, USA.
larryque@umn.edu
Oxoiron(IV) centers are involved in the oxygen activation chemistry
of nonheme iron enzymes. Experimental evidence for the generation
of oxoiron(IV) species from many synthetic iron(II) precursors has
been obtained. Such biomimetic complexes serve as useful models for
the proposed enzymatic oxidants. However, almost all of these synthetic complexes have an S = 1 spin state, while the iron(IV) centers
in oxidizing intermediates of nonheme iron enzymes have an S = 2
spin state. Design strategies to achieve the latter will be discussed. Of
particular interest is a functional model for the a-ketoglutaratedependent iron enzymes. This iron(II) complex (1) activates O2 to
generate an oxidant that can oxidize hydrocarbon substrates shape
selectively.
Fig. 1 X-ray structures of DHP
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J Biol Inorg Chem (2009) 14 (Suppl 1):S33–S44
D-09
Non-heme iron model complexes as models
of superoxide reductase: FeIII-OOR formation,
characterization and dependence on ligand
environment
David P. Goldberg, Frances Namuswe, Gary D. Kasper,
Yunbo Jiang
Department of Chemistry, The Johns Hopkins University,
Baltimore, MA 21218, USA. dpg@jhu.edu
The synthesis, spectroscopic characterization and reactivity of nonheme iron peroxo, oxo, and related species is an area of intense
interest. This talk will describe our recent efforts in the synthesis of
small-molecule models of such species. The active site of the iron
enzyme superoxide reductase (SOR) is our specific target. A new
series of non-heme iron(II) complexes with N4S(thiolate) ligation will
be described, approximating the His4Cys coordination observed in the
reduced, iron(II) form of SOR. These complexes have been shown to
react with alkylhydroperoxides (e.g. tBuOOH) to give metastable
iron(III)-alkylperoxo species that can be trapped at low-temperature.
The spectroscopic characterization (UV–Vis, EPR, RR, EXAFS) of
these FeIII–OOR complexes, combined with a systematic variation of
the S and N donors, has allowed us to correlate important spectroscopic features with the properties of the ligand environment at iron.
One trend that arises from these data suggests a role for the unusual
thiolate donor found in the active site of SOR.
References
1. Namuswe F, Kasper GD, Sarjeant AAN, Hayashi T, Krest CM,
Green MT, Moënne-Loccoz P, Goldberg DP (2008) J Am Chem Soc
130:14189–14200
2. Krishnamurthy D, Kasper GD, Namuswe F, Kerber WD, Sarjeant
AAN, Moënne-Loccoz P, Goldberg DP (2006) J Am Chem Soc
128:14222–14223
S35
References
1. Kovacs JA, Brines LM (2007) Acc Chem Res 40:501–509
2. Shearer J, Scarrow RC, Kovacs JA (2002) J Am Chem Soc
124:11709–11717
3. Kitagawa T, Dey A, Lugo-Mas P, Solomon EI, Kovacs JA (2006) J
Am Chem Soc 128:14448–14449
D-11
New pathways of nonheme-iron-catalyzed oxidation
processes
Peter Comba
Anorganisch-Chemisches Institut, Universität Heidelberg,
Im Neuenheimer Feld 270, 69120 Heidelberg, Germany.
peter.comba@aci.uni-heidelberg.de
Bispidine ligands are extremely rigid, easy to synthesize and available
in a large variety. They enforce coordination geometries derived from
cis-octahedral, and the two vacant coordination sites with the tetradentate ligand systems are sterically and electronically distinct.
Reasons are thoroughly analyzed on the basis of computational work
as well as experimental structural data, thermodynamics and reactivities, specifically for the corresponding iron complexes. As a
consequence, we are able to directly influence the electronic properties and reactivities of the corresponding catalyst systems, and this
has lead to interesting and novel observations with respect to the
oxidation power, reaction mechanisms, spin states of the high-valent
complexes and catalytic efficiencies.
D-10
Understanding how thiolates contribute to the function
of non-heme iron enzymes
Julie A. Kovacs, Santiago Toledo, Elaine Nam, Jessica Pikul,
Rodney D. Swartz, Pauline Alokolaro
Department of Chemistry, University of Washington,
Box 351700, Seattle, Washington 98195-1700, USA.
kovacs@chem.washington.edu
The cysteinate-ligated non-heme iron enzyme superoxide reductase
(SOR) has been shown to selectively reduce superoxide to afford
hydrogen peroxide via an iron–peroxo intermediate that undergoes
preferential Fe–O, as opposed to O–O, bond cleavage [1]. The orientation
of the sulfur has been proposed to play an important role in promoting the
catalytic reaction [1]. Biomimetic analogues [2, 3] of this site will be
described which provide insight as to why nature utilizes a trans thiolate
[1] to promote SOR function. A new series of coordinatively unsaturated
pyridine/thiolate-ligated synthetic models will be described which
reduce O2- via metastable intermediates that, in some cases, can be
reversibly protonated affording an equilibrium acidity constant (Ka) for
the exchangeable proton. By tuning the electronic properties of the metal
ion, we will show that we can alter the preferred reaction pathways.
D-12
Oxidation reactivities of peroxo-diiron(III)
and -dicopper(II) complexes: functional models
for dioxygen activating dimetalloenzymes
Masatatsu Suzuki
Department of Chemistry, Graduate School of Natural Science and
Technology, Kanazawa University, Kakuma-machi, Kanazawa 9201192, Japan. suzuki@cacheibm.s.kanazawa-u.ac.jp
Reactivities of peroxo-diiron(III) and -dicopper(II) complexes are of
particular interest as functional models for the dioxygen activating
diiron and dicopper metalloenzymes such as methane monooxygenase, toluene monooxygenase, and tyrosinase. We have synthesized
two types of peroxodiiron(III) complexes, [Fe2(LPh4)(RCO2)(O2)]2+
(R = Ph3C (oxy-1) and Ph (oxy-2)), the former performs regioselective hydroxylation of a phenyl group of LPh4 and the latter exhibits
reversible dioxygen binding (LPh4 = N,N,N0 ,N0 -tetrakis-[(1-methyl-2phenyl-4-imidazolyl)methyl]-1,3-diamino-2-propanolate) [1]. The
reactions mimic toluene monooxygenase and hemerythrin reactivity,
respectively. We have also succeeded in preparation of (l-g2:g2peroxo)dicopper(II)2 complexes, [Cu2(O2)(R-L)]2+ (oxy-R-1: R = H,
MeO, t-Bu, and NO2), where R-L = 1,3-bis[bis(6-methyl-2-pyridylmethyl)aminomethyl]-5-R-benzene, which can perform not only
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J Biol Inorg Chem (2009) 14 (Suppl 1):S33–S44
hydroxylation of the m-xylyl linker of R-L, but also epoxidation of
styrene via an electrophilic addition of the peroxide to the C=C bond
[2]. In addition, oxy-H-1 can oxidize a variety of aliphatic C–H bonds
which have the bond dissociation energies (BDE) * 75 *92 kcal mol-1 via H-atom abstraction. A good correlation between
the second order rate constants of oxidation of the C–H bonds of the
substrates and their BDEs was observed.
References
1. Yamashita M, Suzuki M et al. (2007) J Am Chem Soc 129:2
2. Matsumoto T, Suzuki T et al. (2006) J Am Chem Soc 128:3874
D-13
Push effect in mononuclear nonheme iron complex
Yutaka Hitomi, Kengo Arakawa, Takuzo Funabiki,
Masahito Kodera
Department of Molecular Chemistry and Biochemistry,
Doshisha University, Kyotanabe 610-0321, Japan.
yhitomi@mail.doshisha.ac.jp
It has been well accepted that an axial thiolate ligand to heme iron
induces the O–O heterolysis of iron(III)-OOH species in the reaction
cycle of cytochrome P450s, which is further assisted by a hydrogen
bonding network to the distal oxygen atom of iron(III)-OOH species.
A similar mechanism is operative in heme-dependent peroxidases, such
as horseradish peroxidase, which is known as the push–pull mechanism.
In the case of peroxidases, both the imidazolate ligand to the heme iron
(push effect) and a protonated His residue in the distal heme pocket (pull
effect) polarizes the O–O bond to promote heterolysis of the O–O bond.
Recently, we started a research program to develop bio-inspired oxidation catalysts based on the abovementioned reaction mechanisms of
heme-dependent oxygenases. As a part of this program, we have synthesized a series of mononuclear nonheme iron(III) complexes
supported by amidate-based ligands [FeIII(dpaqR)(H2O)]+ (1R), where
R = NO2, Cl, H, and Me. The amidate coordination was introduced to
mimic ‘‘push effect’’. We found that its methoxide complex [Fe(dpaq)OMe]+ (2R) reacts with hydrogen peroxide to afford the corresponding
iron(III)-OOH species (3R) at low temperatures. Complex 3R showed an
amidate-to-iron(III) LMCT band at around 500 nm, which gradually
decayed even at 233 K, Such instability cannot be observed with other
iron complexes supported by neutral ligands, i.e., iron-N4Py complex.
The order of the instability of 3R, R = Me [ H [ Cl [ NO2, clearly
demonstrates that the amide anion coordination facilitates the decomposition of iron(III)-OOH species via ‘‘push effect’’.
+
OH
O
N
III N
Fe
N
N
O
N
R
R = Me, H, Cl and NO2
[FeIII(dpaqR)OOH]+ (3R)
D-15
The effects of the secondary coordination sphere
on metal-mediated oxidations
A. S. Borovik
Department of Chemistry, University of California-Irivne,
Irvine, CA 92697, USA. aborovik@uci.edu
Hydrogen bonds stabilize and direct chemistry performed by metalloenzymes. With inspiration from enzymes, we have utilized an
approach that incorporates intramolecular hydrogen bond donors to
123
determine their effects on the stability and reactivity of metal complexes. Our premise is that control of secondary coordination sphere
interactions will promote new function in synthetic metal complexes.
For instance, we have developed a series of complexes with terminal
oxo and hydroxo ligands, which are surrounded by intramolecular
hydrogen bond networks. Our work has established that hydrogen
bonds can compete with pi-bonds to stabilized monomeric oxometal
complexes. This talk will discuss our recent efforts in understanding
dioxygen activation by metal complexes and the reactivity of resultant
oxometal complexes, in which the oxo ligands are highly basic. Our
results indicated that mechanistic changes are correlated with the
basicity of the oxo ligands.
D-16
Striking lessons from nickel-superoxides
and related systems
Shenglai Yao1, Matthias Driess1, Carsten Milsmann2,
Eckhard Bill2, Karl Wieghardt2
1
Institute of Chemistry, Metalorganics and Inorganic Materials, Sekr.
C2, Technische Universität Berlin, Strasse des 17. Juni 135, 10623,
Germany;
2
Max Planck Institute of Bioinorganic Chemistry, Mülheim,
Germany. matthias.driess@tu-berlin.de
Diatomic chalcogen molecules X2 in the coordination spheres of
transition-metals can play an eminent role in oxidation processes in
biological and catalytic systems. While peroxo and persulfido ligands
and their suitability for X-atom transfer reactions have been studied in
great detail, much less is known about paramagnetic superoxo (O2
radical anion) and supersulfido (S2 radical anion) complexes. Moreover, the heavier analogues (Se2 and Te2 anions) are hitherto unknown.
We now learned that using a b-diketiminate nickel(+1) precursor
complex gives facile access to the isolable and surprisingly stable superchalcogenido complexes 1 (X=O) and 2 (X=S) [1, 2] (Fig. 1).
LNi
II
.O
LNi
.S
II
S
O
1
2
. S
S . S
S
LNi II
Ni II L
22
Unexpectedly, complex 2 exists as a diamagnetic dimer 22 with a
four-sulfur two-electron bond. The peculiar structure–reactivity
relationships of 1 and 2 and related studies on the corresponding Se
and Te systems [3] as potential building blocks for metalloenzyme
models will be discussed in my talk.
References
1. Yao S, Bill E, Milsmann C, Wieghardt K, Driess M (2008) Angew
Chem Int Ed 47:7110
2. Yao S, Milsmann C, Bill E, Wieghardt K, Driess M (2008) J Am
Chem Soc 130:13536
3. Driess M et al. submitted
D-17
Bio-inspired alkane oxidation catalysts based
on nickel complexes
Shiro Hikichi, Hideho Okuda, Naoki Imamura, Akiyoshi Ishii,
Jun Nakazawa
Department of Material and Life Chemistry, Faculty of Engineering,
Kanagawa University, Yokohama 221-8686, Japan.
hikichi@kanagawa-u.ac.jp
Development of the efficient oxygenation processes for hydrocarbons
(especially alkanes) is still one of the challenging subjects from the
J Biol Inorg Chem (2009) 14 (Suppl 1):S33–S44
S37
1
Department of Chemistry and Nano Science, Ewha Womans
University, Seoul 120-750, Korea,
2
Department of Chemistry, Stanford University, Stanford, CA 94305,
USA,
3
Picobiology Institute, Graduate School of Life Science, University of
Hyogo, Hyogo 678-1297, Japan. jaeheung@ewha.ac.kr
The binding and activation of dioxygen at transition metal centers are
of great importance for understanding the reaction mechanisms of
metalloenzymes and utilizing metal complexes as oxidation catalysts.
NiO2 intermediates have been developed and investigated to elucidate
highly active species in the oxidative functionalization of organic
substrates [1]. The synthesis and spectroscopic characterization of a
NiO2 complex with a 14-membered macrocyclic ligand were reported
previously [2]. Herein, we report the formation, characterization, and
reactivity of a novel NiO2 complex having a 12-membered macrocyclic ligand, [Ni(12-TMC)(O2)]+ (12-TMC = 1,4,7,10-tetramethyl1,4,7,10-tetraazacyclododecane).
PR3
electrophile
O=PR3
RCOO
nucleophile
radical
RCHO
Aliphatic C-H oxidation
Fig. 1 Rectivity of 1
II
Ni SR
N
N
N
N
N
N
N
N
O2
III
N N
SR
Ni
Ni = H B N N Ni
O O
III
Ni
O2
O OH
Ni OOH
SR
14-TMC
Ph
Ph
Me C OH +
C O
Me
H
Ph
Me C O O
H
II
SR
NO2
N N
Ph
Me C H
H
Ph
Me C
H
R=
Ni
I
CH2Cl2
D-19
Biomimetic and bioinspired oxidation by ruthenium
and osmium oxo complexes
OOH
viewpoints of green and sustainable chemistry. In this work, oxidizing
catalyses of TpR-supported nickel complexes with peroxides as well
as O2 were investigated. An alkylperoxo complex of nickel(II),
[NiII(OOtBu)TpiPr2] (1) exhibited the substrates-depending reactivity
as shown Fig. 1. The thermal decomposition of 1 might proceed
through O–O and Ni–O homolysis, and the resulting radical species
would contribute to the catalytic cyclohexane oxygenation with
TBHP [1]. In contrast, in situ generated acylperoxonickel analogues 2
exhibited high selectivity for the cyclohexane oxygenation to the
corresponding alcohol. We also investigated O2 oxidizing capability
of a thiolato complex, [NiII(SC6H4NO2)TpMe2] (3). Complex 3
reacted with O2 and abstracted a benzylic H atom of ethylbenzen
(Fig. 2).
Reference
1. Hikichi S, Okuda H, Ohzu Y, Akita M (2009) Angew Chem Int Ed
48:188–191
D-18
Contribution of the supporting ligands to NiO2
intermediates
2
References
1. Kimura E, Machida R (1984) J Chem Soc Chem Commun 499–500
2. Kieber-Emmons MT, Annaraj J, Seo MS, Van Heuvelen KM,
Tosha T, Kitagawa T, Brunold TC, Nam W, Riordan CG (2006) J Am
Chem Soc 128:14230–14231
II
Ni Cl
Fig. 2 Alkane oxygenation mediated by 3
1
12-TMC
1
Jaeheung Cho , Ritimukta Sarangi , Jamespondi Annaraj ,
Sung Yeon Kim1, Minoru Kubo3, Takashi Ogura3,
Edward I. Solomon2, Wonwoo Nam1
Tai-Chu Lau
Department of Biology and Chemistry, City University of Hong
Kong, Tat Chee Avenue, Hong Kong. bhtclau@cityu.edu.hk
Nature makes use of iron oxo species to carry out various oxidation
reactions. In this presentation the kinetics and mechanisms of the
oxidation of various inorganic and organic substrates by ruthenium and
osmium oxo complexes will be discussed. These substrates include
alkanes, arenes, NO2-, I-, NCS- etc. The formation of metal-oxo
species is an important step in many enzymatic and chemical oxidation
processes. In this presentation the kinetics of the oxidation of trans[RuIV(tmc)(O)(solv)]2+ to trans-[RuVI(tmc)(O)2]2+ (solv = H2O or
CH3CN) by MnO4- in aqueous solutions and acetonitrile will also be
described. We provide evidence that the initial rate-limiting step in
water occurs by hydrogen atom transfer, while that in acetonitrile
occurs by oxygen atom transfer.
References
1. Man WL, Lam WWY, Wong WY, Lau TC (2006) J Am Chem Soc
128:14669–14675
2. Lam WWY, Man WL, Lau TC (2008) Inorg Chem 6771–6778
3. Lam WWY, Man WL, Leung CF, Wong CY, Lau TC (2007) J Am
Chem Soc 129:13646–13652
D-21
Human P450 heme–oxygen intermediates
Stephen G. Sligar1, James R. Kincaid2, Ilia G. Denisov1,
Piotr J. Mak2, Stephanie L. Gantt1, Aditi Das1, Yelena V. Grinova1
123
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J Biol Inorg Chem (2009) 14 (Suppl 1):S33–S44
1
School of Molecular and Cellular Biology, University of Illinois,
Urbana, IL 61801, USA;
2
Department of Chemistry, Marquette University, Milwaukee,
WI 53233, USA. s-sligar@uiuc.edu
We have examined the electronic, vibrational and magnetic properties of the intermediate states of cytochrome P450 using a
combination of cyrogenic optical, EPR and Raman spectroscopy and
documented the channels leading to productive and uncoupled
pathways. We extended our initial studies using the bacterial P450
CYP101 to the human enzymes involved in drug metabolism
(CYP3A4) and steroid hormone biosynthesis (CYP19, CYP17 and
CYP11A1) by using self-assembled nanoscale lipid bilayer ‘‘Nanodiscs’’. In these membrane-bound systems we document redox
potentials, autoxidation rates, heme–oxygen intermediates and the
existence of a substantial ‘‘oxidase’’ activity represented by water
production from a putative ‘‘Compound I’’ state and will discuss
these results in terms of the chemical reactivity of peroxo and iron–
oxo intermediates.
O2 + S
NADPH
FAD
FMN
H 2 O + S-O
NADP +
References
1. Mak PJ, Denisov IG, Victoria D, Makris TM, Deng T, Sligar SG,
Kincaid JR (2007) J Am Chem Soc 129:6382–6383
2. Denisov IG, Mak PJ, Makris TM, Sligar SG, Kincaid JR (2008) J
Phys Chem A 112:13172–13179
3. Grinkova YV, Denisov IG, Waterman MR, Arase M, Kagawa N,
Sligar SG (2008) Biochem Biophys Res Comm 372:379–382
D-22
Substrate recognition and conformational stability
of the active site in cytochrome P450cam
Rabindra K. Behera, Soumen K. Manna, Shyamalava Mazumdar
Department of Chemical Sciences, Tata Institute of Fundamental
Research, Mumbai 400005, India. shyamal@tifr.res.in
The cytochrome P450cam from P. putida is studied as a model of
the heme mono-oxygenases that are involved several vital biochemical processes such as drug metabolism, detoxification against
xenobiotics and biosynthesis of steroid hormones. The active site of
these enzymes consists of a deeply buried heme center anchored
through a cysteine residue of the enzyme and the intervening amino
acid residues control the entry and binding of the substrate at the
active site of the enzyme. Site-specific mutation at the surface near
the substrate entry channel of the enzyme showed distinct variations
in the substrate association rate constants, suggesting the existence
of a recognition site for the substrate at the enzyme surface. The
structure of the enzyme indicated presence of a unique potassium
ion binding site near the substrate access channel of the enzyme.
Binding of the potassium ion not only facilitated substrate binding
but also stabilized the active form of the enzyme. Moreover, substitution of the potassium ion by calcium ion was found to cause
inactivation of the enzyme forming a P420-type species that was
reversibly converted to the active P450 form on addition of potassium ion. The present talk will describe some of these results in the
light of understanding the conformational properties of the heme
pocket and the effects of substrate binding to the active site in
cytochrome P450cam.
123
D-23
How nature uses oxygen—lessons from enzymes
and model compounds
John T. Groves
Department of Chemistry, Princeton University, Princeton NJ 08544,
USA. jtgroves@princeton.edu
The central paradigms of aerobic life processes derive from our
understanding of how the redox chemistry of oxygen is manipulated
and controlled by iron- and manganese-containing proteins. Nature
has exploited the large, intrinsic driving force for the reduction of
oxygen to water in a variety of intriguing ways. Now that the core
chemistry of these processes has been revealed, they can be seen as a
set of remarkably similar themes involving oxo- and peroxo-transition
metal complexes. In this lecture we compare and contrast those
mechanistic strategies looking alternately at heme proteins such as
cytochrome P450, non-heme iron proteins such as AlkB and NDO
and models metalloporphyin complexes containing iron and manganese. The oxygen activation and transfer reactions catalyzed by the
heme and non-heme families of iron-containing oxygenase enzymes
produce reactive metal–oxo intermediates. We find that a full
understanding of the nature of these reactions requires consideration
of metal ligation and peripheral substitution effects [1], spin-state
crossing effects [2] and the stochastic effects of in-cage recombination and cage escape [3]. The lecture will describe recent
experimental results and some new insights regarding these fascinating and important reactions.
References
1. Jin N, Ibrahim M, Spiro TG, Groves JTJ (2007) Am Chem Soc
129:12416–12417
2. De Angelis F, Jin N, Car R, Groves JT (2006) Inorg Chem
45(10):4268–4276
3. Austin RN, Luddy K, Erickson K, Pender-Cudlip M, Bertrand E,
Deng D, Buzdygon RS, van Beilen JB, Groves JT (2008) Angew
Chem 47:5232–5234
Acknowledgments
We thank the NIH (R37 GM36298, MERIT award), the NSF (CHE0316301; Special Creativity Award) and the NSF-EMSI, CEBIC, at
Princeton University, (CHE-9814301) for generous support of this
research.
D-24
Human indoleamine 2,3-dioxygenase: new inhibitors
and their functional consequences
A. Grant Mauk,1 Federico I. Rosell,1 Gavin Carr2
Raymond J. Andersen2
1
Department of Biochemistry and Molecular Biology, The Centre for
Blood Research, University of British Columbia, Vancouver BC V6T
1Z3, Canada;
2
Departments of Chemistry and Earth and Ocean Sciences, University
of British Columbia, Vancouver, BC V6T 1Z? Canada.
mauk@interchange.ubc.ca
The role played by indoleamine 2,3-dioxygenase (IDO) in the
immune escape mechanism of solid tumors has made it an appealing
target for therapeutic intervention [1]. Using high throughput
screening assays, we have identified several new and potent inhibitors
of human IDO in extracts prepared from marine invertebrates and
from microbes cultured from marine sediments. The structures of
several of these new inhibitors have been determined. Their mechanism of inhibition and of some synthetic analogues related to
exiguamine A [2] are uncompetitive with respect to Trp and exhibit
submicromolar inhibitory constants. To evaluate the effects of these
inhibitors on the interaction of the enzyme with diatomic gaseous
J Biol Inorg Chem (2009) 14 (Suppl 1):S33–S44
S39
ligands, we have begun to study their effect on the affinity of the
enzyme for dioxygen and on the binding of CO. The results indicate
that these new inhibitors may be useful mechanistic probes as well as
potential therapeutic leads.
Acknowledgments
This study was supported by grants from the National Cancer Institute
of Canada and the Canadian Cancer Society (to A.G.M. and R.J.A.).
References
1. Muller AJ, Scherle PA (2006) Nat Rev Cancer 6:613–625
2. Carr G, Chung MK, Mauk AG, Andersen RJ (2008) J Med Chem
51:2634–2647
D-25
Crystal structures of the substrate-free and the decoy
molecule-bound forms of cytochrome P450BSb
1
1
2
Osami Shoji , Takashi Fujishiro , Shingo Nagano ,
Yoshitsugu Shiro2, Yoshihito Watanabe3
1
Department of Chemistry, Graduate School of Science,
Nagoya University, Nagoya 464-8602, Japan;
2
RIKEN SPring-8 Center, Harima Institute, 1-1-1 Kouto,
Sayo, Hyogo 679-5148, Japan;
3
Research Center for Material Science, Nagoya University,
Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan.
shoji.osami@a.mbox.nagoya-u.ac.jp
In contrast to most P450s, P450BSb (CYP152A1) isolated from
Bacillus subtilis utilizes hydrogen peroxide to catalyze the hydroxylation of long-alkyl-chain fatty acid. Recently, we have reported that
P450BSb can catalyze oxidation of a variety of non-natural substrates,
such as hydroxylation of ethylbenzene, by employing a simple substrate trick: a series of short alkyl-chain carboxylic acids are
misrecognised as substrates [1]. In order to examine possible structural changes induced by the substrate and decoy molecule binding,
the crystal structural studies of the substrate-free form and a decoy
molecule-bound form were carried out and compared those structures
with that of the palmitic acid bound form reported (1IZO).
Reference
1. Shoji O, Fujishiro T, Nakajima H, Kim M, Nagano S, Shiro Y,
Watanabe Y (2007) Angew Chem Int Ed 46:3656–3659
D-27
The oxidation of L-tryptophan in biology
Nishma Chauhan,1 Sarah J. Thackray,2 Sara A. Rafice,2
Igor Efimov,1 Jaswir Basran,3 Christopher G Mowat,2
Stephen K. Chapman,2 Emma Raven
1
Department of Chemistry, University of Leicester, University Road,
Leicester, LE1 7RH, UK;
2
EaStCHEM, School of Chemistry, University of Edinburgh, West
Mains Road, Edinburgh EH9 3JJ, UK;
3
Department of Biochemistry, University of Leicester, Lancaster
Road, Leicester, LE1 9HN, UK. emma.raven@le.ac.uk
The L-kynurenine pathway—which leads to the formation of NAD—is
the major catabolic route of L-tryptophan metabolism in biology. The
initial step in this pathway is oxidation of L-tryptophan to N-formylkynurenine (Scheme 1). In all biological systems examined to date, this
is catalysed by one of two heme enzymes, tryptophan 2,3-dioxygenase
(TDO) or indoleamine 2,3-dioxygenase (IDO), in a reaction mechanism that involves binding of O2 to ferrous heme. We have examined
the activity of three heme dioxygenases (human IDO, human TDO and
X. campestris TDO) with 1-Me-L-Trp. In contrast to previous work, we
find that 1-Me-L-Trp is a slow substrate. These observations are
inconsistent with current proposals in the literature for the mechanism
of substrate oxidation, and we propose an alternative.
References
1. Sono M, Roach MP, Coulter ED, Dawson JH (1996) Chem Rev
96:2841
2. Chauhan N et al. (2009) J Am Chem Soc (in press)
D-28
How do novel functions evolve from existing protein
scaffolds?
C. S. Raman
Department of Biochemistry and Molecular Biology,
University of Texas Medical School, MSB 6.128, 6431 Fannin
Houston, TX 77030, USA. c.s.raman@uth.tmc.edu
Understanding the relationship between protein structure and function
is one of the greatest challenges in structural biology. In this lecture, I
will discuss our recent efforts to gain molecular insights into how new
biosynthetic pathways evolve. Specifically, my talk will focus on the
generation of oxygenated lipid mediators by the cytochrome P450
superfamily. Lipid mediators constitute a broad spectrum of molecules,
including vasoactive substances in mammals and volatile organic
compounds that confer characteristic flavors to fruits and vegetables.
Plant oxylipins (such as jasmonates) and animal prostaglandins are
short-lived but potent peroxide-derived lipid mediators that share
strikingly similar biological activities, including metabolic regulation,
reproduction, and host defense. Their biosynthesis involves extraordinary rearrangements of labile organic peroxides by a novel group of
heme thiolate enzymes belonging to the cytochrome P450 superfamily.
In spite of three decades of intense research, it has been difficult to
unravel how some of these molecules are produced. Equally unclear is
the evolutionary origin of the enzymes that synthesize these diverse
groups of signaling molecules. Here, I will offer an atomic description
of the enzymes involved in oxylipin biosynthesis. I will also elaborate
on how our structural efforts led to the discovery of new oxylipin
signaling pathways in both bacteria and marine invertebrates [1].
References
1. Lee DS, Nioche P, Hamberg M, Raman CS (2008) Nature
455:363–368
Acknowledgments
This work is supported by The Robert A. Welch Foundation, Pew
Scholars Program in Biomedical Sciences, The American Heart
Association, and The NIH.
123
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D-29
Mechanisms, kinetics and thermodynamics of halide
oxidation by human heme peroxidases
Christian Obinger, Johanna Stampler, Markus Auer,
Paul G. Furtmüller
Department of Chemistry, Division of Biochemistry, BOKU,
University of Natural Resources and Applied Sciences, Muthgasse 18,
1190 Vienna, Austria. christian.obinger@boku.ac.at
The recently proposed peroxidase-cyclooxygenase superfamily
includes enzymes from all living kingdoms with a broad spectrum of
enzymatic features and physiological roles [1]. These proteins have
differentiated very early in the evolutionary history as cornerstone of
the innate immune defence system. Before organisms have developed
an acquired immunity, their antimicrobial defence depended on
enzymes that were recruited upon pathogen invasion and produced
microbicidal reactive oxidants and diffusible radical species.
A unique activity of these enzymes is their ability to use hydrogen
peroxide and halides (Cl-, Br-, I-) and/or thiocyanate as two-electron donors to generate halogenating oxidants such as hypohalous
acids [2]. Here, we discuss the mechanisms, kinetics and thermodynamics of halide oxidation by mammalian peroxidases. It is presented
how structural differences in their active sites (e.g. heme to protein
linkages, heme asymmetry and distortion) are reflected by distinct
thermodynamic and kinetic features [3].
References
1. Zamocky M, Jakopitsch C, Furtmüller PG, Dunand C, Obinger C
(2008) Proteins 71:589–605
2. Arnhold J, Monzani E, Furtmüller PG, Zederbauer M, Casella L,
Obinger C (2006) Eur J Inorg Chem 3801–3811
3. Zederbauer M, Furtmüller PG, Brogioni S, Jakopitsch C, Smulevich G, Obinger C (2007) Nat Prod Res 24:571–584
D-30
Conformational dynamics in the reductase domain
of nitric oxide synthase
Huiying Li1, Aditi Das2, Hiruy Sibhatu1, Joumana Jamal1,
Stephen G. Sligar2, Thomas L. Poulos1*
1
Departments of Molecular Biology and Biochemistry, Chemistry and
Pharmaceutical Sciences, University of California, Irvine, CA 92697,
USA;
2
Departments of Biochemistry, Chemistry, The Center for Biophysics
and Computational Biology, The College of Medicine, University of
Illinois, Urbana, IL 61801, USA. poulos@uci.edu
As in P450s electrons in nitric oxide synthase (NOS) are delivered
from a FAD/NADPH/FMN reductase domain to the heme, a required
reaction for proper O2 activation and substrate hydroxylation. In
NOS, however, the heme and reductase domains are linked together
as a single polypeptide chain and calmodulin binding to NOS regulates electron flow from the reductase to heme. It is generally thought
that the reductase domain is quite flexible and that large movements
must occur for the FMN domain to pick up an electron from FAD and
then undergo a large repositioning required for proper alignment with
the heme domain. Calmodulin binding favors the ‘‘output state’’
wherein the FMN is in position to reduce the heme. The crystal
structure of the reductase domain [1] shows that, like in P450
reductase, the FMN and FAD are quite close. We now have shown
that mutations at the FMN/FAD interface are critical in controlling
the FMN redox potential and the ability of calmodulin to promote the
‘‘output state’’. The changes are subtle indicating that the dramatic
effects observed when calmodulin binds are due to small changes in
free energy.
123
J Biol Inorg Chem (2009) 14 (Suppl 1):S33–S44
Reference
1. Garcin ED, Bruns CM, Lloyd SJ, Hosfield DJ, Tiso M, Gachhui R,
Stuehr DJ, Tainer JA, Getzoff ED (2004) J Biol Chem
279(36):37918–37927
D-31
Theoretical studies on short-lived intermediates
in the catalytic cycle of cytochrome P450
and their reactivity patterns
Sam P. de Visser1
1
Manchester Interdisciplinary Biocenter, University of Manchester,
131 Princess Street, Manchester M1 7DN, UK.
sam.devisser@manchester.ac.uk
The cytochromes P450 are important heme enzymes in biosystems
involved in drug metabolism and detoxification processes in the body.
in spite of extensive experimental and theoretical studies there are
still controversies regarding the nature of the active oxidant that
performs the substrate monoxygenation. We have done a series of
density functional theory and quantum mechanics/molecular
mechanics calculations on cytochrome P450 enzymes and active site
mimics to elucidate the properties of potential oxidants and their
reactivity patterns [1, 2]. In this presentation we will highlight the
latest achievements of our group using DFT and valence bond
methods and thermodynamic cycles to explain the fundamental differences between heme and nonheme monoxygenases [3].
References
1. Shaik S, Kumar D, de Visser SP (2008) J Am Chem Soc
130:10128–10140
2. Tahsini L, Bagherzadeh M, Nam W, de Visser SP (2009) Chem Eur
J (submitted)
3. de Visser SP (2006) J Am Chem Soc 128:9813–9824
D-32
Structural studies of the intermediates
in the reaction between myoglobin and peroxides:
effects of cryoradiolytic reduction
K. Kristoffer Andersson1, Hans-Petter Hersleth1
1
Department of Molecular Biosciences, University of Oslo, 0316
Oslo, Norway. k.k.andersson@imbv.uio.no
The intermediates generated in the reaction between myoglobin and
peroxides mimic the intermediates found in many peroxidases, oxygenases and catalases [1, 2]. These myoglobin intermediates are also
relevant because myoglobin is proposed to take part as scavenger of
reactive oxygen species during oxidative stress. We have in this study
combined crystallography and single-crystal light absorption spectroscopy (microspectrophotometry). Radiation-induced changes of the
different intermediates in this reaction cycle have been observed and
followed by microspectrophotometry [2–5]. We have been able by
cryoradiolytic reduction of an oxymyoglobin equivalent (compound
III) to generate and trap the so-called peroxymyoglobin intermediate,
J Biol Inorg Chem (2009) 14 (Suppl 1):S33–S44
S41
References
1. Thomas KE, Wasbotten IH, Ghosh A (2008) Inorg Chem
47:10469–10478
2. Roos BO, Veryazov V, Conradie J, Taylor PR, Ghosh A (2008) J
Phys Chem B 112:14099–14102
Scheme 1 Reaction catalysed by IDO and TDO
a Fe(II)-superoxide form indicated by quantum refinement analysis
[2, 4]. By annealing of this compound the oxygen–oxygen bond is
broken and the reaction propagates to the compound II intermediate
[3–5]. The structures have further been refined with quantum refinement [1, 4, 5] together with Ulf Ryde.
References
1. Hersleth H-P, Ryde U, Rydberg P, Görbitz CH, Andersson KK
(2006) J Inorg Biochem 100:460–476
2. Hersleth H-P et al. (2008) Inorg Chim Acta 361:831–843
3. Hersleth H-P, Uchida T, Røhr ÅK, Teschner T, Schünemann V,
Kitagawa T, Trautwein AX, Görbitz CH, Andersson KK (2007) J Biol
Chem 282:23372–23386
4. Hersleth H-P, Hsiao Y-W, Ryde U, Görbitz CH, Andersson KK
(2008) Biochem J 412:257–264
5. Hersleth H-P, Hsiao Y-W, Ryde U, Görbitz CH, Andersson KK
(2008) Chem Biodiv 5:2067–2089
D-33
Metallocorroles as models of high-valent heme protein
intermediates
Abhik Ghosh, Abraham Alemayehu, Kolle E. Thomas,
Can Capar, Emmanuel Gonzalez
Department of Chemistry, University of Tromsø, 9037 Tromsø,
Norway. abhik@chem.uit.no
Metallocorroles are intriguing as stable models of heme protein
compound I and compound II intermediates. They exhibit an amazing
range of electronic structures, spectroscopic and electrochemical
properties. Here we will present our findings on b-octakis(trifluoromethyl)corrole complexes (see diagram below) recently prepared in
our laboratory [1], focusing on copper, manganese, and iron derivatives. Although chloroiron corrole derivatives have long been
recognized as noninnocent [2], copper corroles have until now been
thought of as true Cu(III) complexes. Combined crystallographic,
spectroscopic, electrochemical and high-level theoretical (CASPT2)
studies now indicate that even copper corroles are best viewed as
antiferromagnetically coupled CuII-corrole2-. This antiferromagnetic
coupling, mediated by a specific Cu(dx2-y2)-corrole(p) orbital interaction, is so strong that it results in a buckling of the corrole
macrocycle, i.e. even sterically unhindered copper corroles are
inherently buckled, a situation that is very different from cobalt
corroles, which are planar even for highly hindered corrole ligands.
We will attempt to find parallels between these and other intriguing
aspects of corrole chemistry and spectroscopic features of metalloenzyme intermediates such as chloroperoxidase compound II and the
ox1 state of methylcoenzyme M reductase.
D-35
Exploring the role of the active site methionine residue
in PHM catalysis
Brenda A. Broers1, Corinna Hess2, Andrew T. Bauman1,
Judith P. Klinman2, Ninian J. Blackburn1
1
Department of Science and Engineering, Oregon Health and
Sciences University, Beaverton, OR 97006, USA;
2
Department of Chemistry, University of California, Berkely,
CA 94720, USA. ninian@ebs.ogi.edu
Methionine 314 plays a critical role in PHM catalysis. No clear role
for this residue has emerged but a number of proposals suggest that it
may (i) stabilize the Cu(II)-superoxo intermediate (ii) stabilize the
reduced form of the enzyme and (iii) provide a fluxional coordinate
for H tunneling. For WT PHM the intensity of the Cu–S interaction in
the Cu(I) EXAFS data is inversely proportional to catalytic activity
over the pH range 3–8. At pH 8, the reduced Cu(I) spectrum can be
simulated by replacing the CuM Cu–S(Met) interaction with a Cu–N/
O. However, the pH 3.5 data still show the presence of a strong Cu–S
interaction, and establish that the form observed at low pH in WT
cannot be due to a M314 ‘‘on’’ conformer, but must arise from a
different Cu–S interaction. These data are confirmed by studies of CO
binding which show that M314H does not bind CO at pH 8, but that
both WT and mutant exhibit a new FTIR band at 2,111 cm-1
assignable to the low-pH S-containing species. Therefore, lowering
the pH causes a conformational change at one of the Cu centers which
brings a new Cys or Met residue into a favorable orientation for
coordination to the metal center generating an inactive form. These
data, together with parallel results on tyramine b monooxygenase, are
discussed in relation to the PHM catalytic mechanism (Fig. 1).
Fig. 1 Structure of the PHM Active Site. The YVG substrate is
shown in red. M314 is shown coordinated to CuM as a yellow side
chain
123
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J Biol Inorg Chem (2009) 14 (Suppl 1):S33–S44
D-36
Peptidylglycine a-hydroxylating monooxygenase
(PHM): oxygen activation and small molecule binding
by a copper center
D-38
Copper-dioxygen and cupric-hydroperoxo
mononuclear complexes: formation, characterization
and substrate reactivity
Eduardo E. Chufán1, Sean T. Prigge2, Betty A. Eipper3,
Richard E. Mains3, L. Mario Amzel1
1
Department of Biophysics and Biophysical Chemistry,
Johns Hopkins School of Medicine, Baltimore, MD 21205, USA;
2
Molecular Microbiology and Immunology, Johns Hopkins
Bloomberg School of Public Health, Johns Hopkins University,
Baltimore, MD 21205, USA; 3Department of Neuroscience,
University of Connecticut Health Center, Farmington,
CT 06030, USA. mamzel@jhmi.edu
Peptidylglycine a-hydroxylating monooxygenase (PHM) catalyzes
the first step in the activation of peptide hormones and neurotransmitters: the stereospecific hydroxylation of the Ca of a
C-terminal peptidylglycine. The enzyme uses for catalysis two
separate Cu sites (CuM and CuH) located *11 Å from each other;
CuM is the metal involved directly in catalysis while CuH is
associated with electron transfer. Using X-ray diffraction, sitedirected mutagenesis and kinetic characterization, we identify
important intermediates in the reaction mechanism. In addition, we
proposed a path for the transfer of an electron from CuH to the site
of CuM. To determine whether only oxygen does not bind to CuH
or this lack of binding is a general feature of CuH, we determined
the structures of the complexes of PHM with other small molecules
such as nitrite (NO2-) and azide (N3-). Nitrite anion coordinates
CuM but, surprisingly, not CuH despite the high concentration of
nitrite used in the experiments (nitrite/protein [ 1,000). Similarly,
azide binds CuM but not CuH. The lack of binding of small molecules to CuH may be correlated with its functional role as an
electron-transfer site.
Kenneth D. Karlin
Department of Chemistry, Johns Hopkins University, Baltimore,
MD 21218, USA. karlin@jhu.edu
For a number of copper metalloenzymes, copper(I)-dioxygen adducts
or derived species are oxygenating (oxygenase) or oxidant (oxidase)
active species. Mononuclear CuI/O2 activation chemistry is considered to be important and of considerable recent interest. Here, we will
describe: (i) CuI/dioxygen chemistry involving tripodal tetradentate
ligands which lead to end-on bound superoxo-copper(II) complexes.
Their kinetics of formation, spectroscopic and structural characterization along with reactivity traits will be presented. (ii) The
chemistry of copper(II) or dicopper(II) hydroperoxo complexes, i.e.,
CuIIn (-OOH) (n = 1 or 2), will also be described and we show that
these can effect substrate C–H activation/oxygenation chemistries,
such as N-alkyl hydroxylation or oxidative N-dealkylation. (iii)
Chemistry of a new system where two-electron reduction of O2 is
effected at a single copper ion ligand complex.
D-37
Identifying the active site of particulate methane
monooxygenase
Amy C. Rosenzweig
1
Departments of Biochemistry, Molecular Biology, and Cell Biology
and Chemistry, Northwestern University, Evanston, IL, USA.
amyr@northwestern.edu
Particulate methane monooxygenase (pMMO) catalyzes the oxidation of methane to methanol in methanotrophic bacteria. The
300 kDa pMMO enzyme is a trimeric integral membrane protein,
comprising three copies each of three subunits: pmoB, pmoA, and
pmoC. In spite of extensive spectroscopic characterization and the
availability of two crystal structures [1, 2], the location and metal
composition of the pMMO active site remain unknown. We have
detected three different metal centers crystallographically: a highly
conserved dinuclear copper center, a nonconserved mononuclear
copper center, and a site that can be occupied by zinc or copper. On
the basis of spectroscopic data, other researchers have reported the
presence of trinuclear copper center or a dinuclear iron center, of
which each was proposed to be the active site. We present here new
activity, biochemical, and spectroscopic data that directly address
the validity of these models.
References
1. Hakemian AS, Kondapalli KC, Telser J, Hoffman BM, Stemmler
TL, Rosenzweig AC (2008) Biochemistry 47:6793
2. Rosenzweig AC (2008) Biochem Soc Trans 36:1134
123
References
1. Maiti D, Lee D-H, Gaoutchenova K, Würtele C, Holthausen MC,
Sarjeant AAN, Sundermeyer J, Schindler S, Karlin KD (2008) Angew
Chem Int Ed 47:82–85
2. Maiti D, Narducci Sarjeant AA, Karlin KD (2008) Inorg Chem
47:8736–8747
D-39
Copper chemistry within biomimetic chambers
Olivia Reinaud
Laboratoire de Chimie et Biochimie Pharmacologiques et
Toxicologiques, Université Paris Descartes, CNRS UMR 8601,
45 rue des Saints-Pères, 75006 Paris, France.
Olivia.Reinaud@parisdescartes.fr
We are interested in modeling mono-nuclear active sites of copperenzymes with ligands reproducing not only the first coordination
sphere (a poly-histidine core by an aza-site), but also the hydrophobic
funnel controlling the substrate binding. For this purpose, we have
designed a ligand family, the calix[6]aza-cryptands, based on the
calix[6]arene core onto which a poly-aza cap has been grafted at the
small rim. The resulting capped structures provide a strong chelate
effect, preclude any bimetallic interaction and enforce exogenous
ligation exclusively through the funnel. The corresponding Cu(I) and
Cu(II) complexes, their coordination properties and supramolecular
behavior will be presented, together with recent insights into their
ability to activate dioxygen.
N
NH NHHN
N
N NN
P
NH HNHN
Calix[6]tren
Calix[6]tmpa
Calix[6]PN3
J Biol Inorg Chem (2009) 14 (Suppl 1):S33–S44
References
1. Izzet G, Douziech B, Prangé T, Tomas A, Jabin I, Le Mest Y,
Reinaud O (2005) Proc Natl Acad Sci USA 102:6831–6836
2. Izzet G, Rager M-N, Reinaud O (2007) Dalton Trans 771–780
3. Izzet G, Zeng X, Akdas H, Marrot J, Reinaud O (2007) Chem
Commun 810–812
4. Izzet G, Zeng X, Over D, Douziech B, Zeitouny J, Giorgi M, Jabin
I, Le Mest Y, Reinaud O (2007) Inorg Chem 46:375–377
5. Izzet G, Zeitouny J, Akdas-Killig H, Frapart Y, Ménage S, Douziech B, Jabin I, Le Mest Y, Reinaud O (2008) J Am Chem Soc
130:15226–15227
D-41
Activation and catalysis of inactive phenoloxidase
and hemocyanins
Heinz Decker
Institute for Molecular Biophysics, University of Mainz,
55099 Mainz, Germany. hdecker@uni-mainz.de
Among type 3 copper proteins hemocyanins (Hc) serve as oxygen
carrier, phenoloxidase (PO) comprising tyrosinase (Ty) and catecholoxidase (CO) are enzymes starting the biosynthesis of melanin
being involved in innate immunity, wound healing, coloring of hair
and eyes, browning of fruit and plants. We suggest molecular
mechanisms for the activation and catalysis [1–5]. Our model
explains why oxidation process turns hair grey [6].
Acknowledgment
This work was granted by the DFG and EC.
References
1. Decker H, Schweikardt T, Tuczek F (2006) Angew Chem Engl Ed
45:4546–4550
2. Baird S, Kelly SM, Price NC, Jaenicke E, Meesters C, Nillius D,
Decker H, Nairn J (2007) Biochem Biophys Acta 1774:1380–1394
3. Chong Y, Ludtke SJ, Woolford DSA, Khant HA, Chiu W,
Schweikardt T, Decker H (2009) submitted
4. Decker H, Schweikardt T, Nillius D, Salzbrunn U, Jaenicke E,
Tuczek F (2007) Gene 398:183–191
5. Nillius D, Jaenicke E, Decker H (2008) FEBS Lett 582:749–754
6. Wood JM, Decker H, Hartmann H, Chavan B, Rokos H, Spencer
JD, Hasse S, Thornton J, Shalbaf M, Paus R, Schallreuter KU (2009)
FASEB J. doi:10.1096/fj.08-125435
D-42
Tyrosinase: mechanistic studies and new reactivity
Luigi Casella
Dip. Chimica Generale, Univ. Pavia, Via Taramelli 12, 27100 Pavia,
Italy. bioinorg@unipv.it
Tyrosinase is a ubiquitous dinuclear copper enzyme catalyzing the
efficient oxidation of phenolic and catecholic substrates to quinones,
and is therefore classified as an internal monooxygenase. The activity
and mechanism of tyrosinase have been the focus of enzymatic and
model studies in our laboratory for almost two decades [1]. A recent
X-ray structure determination of the enzyme from S. castaneoglobisporus clarified important details about the dinuclear copper active
site [2]. Important aspects of the enzyme reactivity remain not known,
including the mode of substrate binding and dioxygen activation at the
dinuclear copper center. According to biomimetic studies, three types
of copper-dioxygen species are apparently suitable for the reaction: a lg2:g2-peroxidodicopper(II), a bis(l-oxido)dicopper(III), or a l-hydroperoxido-dicopper(II) species [1, 3]. Though, the activation parameters
which characterize the biomimetic phenol hydroxylations are quite
different from those we found for mushroom tyrosinase [4]. These data
were obtained from enzymatic studies performed at variable
S43
temperature in a mixed aqueous-organic solvent. Other recent developments enabled us to set up enzymatic and model studies where
tyrosinase and dinuclear copper complexes perform the sulfoxidation
of organic sulfides. In this case, the reaction requires the presence of a
co-substrate, and therefore the enzymatic activity becomes equivalent
to those of external monooxygenases like cytochrome P450 [5].
References
1. Battaini G et al. (2006) Adv Inorg Chem 58:185–233
2. Matoba Y et al. (2006) J Biol Chem 281:8981–8990
3. Lewis EA, Tolman WB (2004) Chem Rev 104:1047–1076
4. Granata A et al. (2006) Chem Eur J 12:2504–2514
5. Pievo R et al. (2008) Biochemistry 47:3493–3498
D-43
O2-activation at an asymmetric dicopper center
Isaac Garcia-Bosch1, Anna Company1, Xavi Ribas, Miquel Costas
1
Department of Chemistry, Facultat de Ciències, Universitat de
Girona, Campus de Montilivi, 17071, Spain. Miquel.costas@udg.edu
Understanding the intimate details of O2 binding/activation at copper
sites is of interest because of the relevance of such reactions in biological and technological processes [1]. For the particular case of
dicopper sites, three basic Cu2O2 core structures have been widely
described [1].
CuII
O
O
CuII
CuII
O
O CuII
CuII2(µ-η 2:η 2-O2) trans-CuII2(µ-η1:η1-O2)
CuIII
O
O
CuIII
CuIII2(µ-O)2
Each specific Cu2O2 core determines particular spectroscopic and
chemical properties [3]: while end-on trans-CuII2 (l-g1:g1-O2) species
exhibit nucleophilic–basic behavior, side-on CuII2 (l-g2:g2-O2) and bisl-oxo dicopper(III) cores show an electrophilic–acid oxidant character. The rich and subtle chemistry exhibited by Cu2O2 cores makes
asymmetric options interesting, but Cu2O2 species in systems containing distinct copper sites have been seldom observed [2], and a
unique example of an asymmetric CuII2 -l-g1:g2-O2 core has been
reported [3]. Herein we describe the O2 chemistry of a novel unsymmetric dicopper complex. The chemistry of the corresponding
Cu2O2 species offer new insights that call into revision our current
understanding of the mechanism of O2 activation at dicopper sites.
References
1. Itoh S (2004) Comprehensive coordination chemistry II, vol 8. In:
Que L Jr, Tolman WB (eds) Elsevier, Amsterdam, pp 369–393
2. Mirica LM, Ottenwaelder X, Stack TDP (2004) Chem Rev
114:1013
3. Lewis EA, Tolman WB (2004) Chem Rev 114:1047
4. Hatcher LQ, Karlin KD (2004) J Biol Inorg Chem 9:669
5. Battaini G, Granata A, Monzani E, Gullotti M, Casella L (2006)
Adv Inorg Chem 58:185
6. Tachi Y, Aita K, Teramae S, Tani F, Naruta Y, Fukuzumi S, Itoh S
(2004) Inorg Chem 43:4558
D-44
Tyrosinase reactivity in a model complexes:
an alternative hydroxylation mechanism through
a Cu(III)-bis-oxide intermediate
Pratik Verma, Peng Kang, Liviu M. Mirica, Francois Cuenot,
Michael Vance, Edward I. Solomon, T. Daniel P. Stack
123
S44
Department of Chemistry, Stanford University, California 94305,
USA. stack@stanford.edu
The dinuclear copper enzyme tyrosinase activates dioxygen to form a
side-on peroxodicopper(II) complex, which is capable of oxidizing
phenols to catechols. Several synthetic side-on peroxodicopper(II)
complexes created with simple diamine ligands will be discussed that
faithfully reproduce the spectrum of oxygenated tyrosinase, yet converted to Cu(III)-bis-oxide species upon phenolate addition at
extreme temperatures (153 K). These species decay with hydroxylation of the aromatic ring by a mechanism that shares the hallmarks of
an electrophilic aromatic substitution mechanism, as seen with the
enzyme. DFT calculations on this system support strongly that the
bis-m-oxodicopper(III) species can serve as the electrophilic agent in
this oxidation. Overall, the evidence for sequential O–O bond
cleavage and C–O bond formation suggests an alternative mechanism
to the concerted or late-stage O–O scission generally accepted for
phenol hydroxylation by tyrosinase.
D-45
Reduction of dioxygen to water by the multicopper
oxidases
Edward I. Solomon
Department of Chemistry, Stanford University, Stanford, CA, USA.
Edward.Solomon@stanford.edu
In nature the four electron reduction of O2 to H2O is carried out by
Cytochrome c Oxidase (CcO) and the multicopper oxidases (MCOs).
In the former, Cytochrome c provides electrons for pumping protons
to produce a gradient for ATP synthesis, while in the MCOs the
function is the oxidation of substrates, either organic or metal ions. In
the MCOs the reduction of O2 is carried out at a trinuclear Cu cluster
(TNC). Oxygen intermediates have been trapped which exhibit
unique spectroscopic features that reflect novel geometric and electronic structures. These intermediates have both intact and cleaved O–
O bonds, allowing the reductive cleavage of the O–O bond to be
studied in detail both experimentally and computationally. These
studies show that the topology of the TNC provides a unique geometric and electronic structure particularly suited to carry out this key
reaction in nature.
J Biol Inorg Chem (2009) 14 (Suppl 1):S33–S44
Reference
1. Solomon EI, Augustine AJ, Yoon J (2008) Reduction of O2 to H2O
by the multicopper oxidases. Dalt Trans 30:3921–3932
D-46
Formation of a bridged butterfly dicopper core and its
relevance to stepwise O2-activation in biological systems
Yasuhiro Funahashi, Tomoaki Toyama, Kotaro Yoshii, Tomohide
Nishikawa, Tomohiko Inomata, Tomohiro Ozawa, Hideki
Masuda
Department of Frontier Materials, Graduate School of Engineering,
Nagoya Institute of Technology, Nagoya 466-8555, Japan.
funahashi.yasuhiro@nitech.ac.jp
In biological systems, the active dimetal center acts for dioxygen
uptake and activation. In type III copper proteins, dioxygen binds to the
dicopper(II) center in the l-g2:g2-type side-on mode for its transportation and substrate-oxygenation, respectively. Recently, we succeeded
in synthesizing a l-g2:g2-peroxodicopper(II) complex, [CuII2 (aSp)2
(l-g2:g2-O2)(Bz2)]SbF6 (aSp = a-isosparteine, Bz2 = benzoate), and
revealed its crystal structure by X-ray diffraction analysis (Fig. 1) [1].
The new butterfly-type l-peroxo dicopper(II) complex can be readily
formed by oxygenation of the copper(I) state in the presence of Bz2 or
conversion of the corresponding bis(l-oxo)dicopper(III) species with
axial coordination of Bz2 in organic solution at -80°C. These reactions may be related to the controlled stepwise reduction of dioxygen in
non-heme diiron proteins and oxidation of water to evolve dioxygen in
manganese cluster of photosystem II.
Fig. 1 Structure of the ‘‘Bridged-Butterfly core’’ of a O2-binding
dicopper(II) complex, 1
Reference
1. Funahashi Y, Nishikawa T, Wasada-Tsutsui Y, Kajita Y, Yamaguchi S, Arii H, Ozawa T, Jitsukawa K, Tosha T, Hirota S, Kitagawa T,
Masuda H (2008) J Am Chem Soc 130:16444–16445
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