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Ru, Rh and Ir metal complexes of pyridyl chalcone derivatives: Their potent antibacterial activity, comparable cytotoxicity potency and selectivity to cisplatin
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Ru, Rh and Ir metal complexes of pyridyl chalcone derivatives: Their potent antibacterial
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activity, comparable cytotoxicity potency and selectivity to cisplatin
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Lincoln Dkhara, Venkanna Banothub, Emma Pinderc, Roger M. Phillipsc, Werner Kaminskyd,
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Mohan Rao Kolliparaa*
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aCentre for Advanced Studies in Chemistry, North-Eastern Hill University, Shillong 793 022,
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India.
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bCentre for Biotechnology (CBT), Institute of Science & Technology (IST), Jawaharlal Nehru
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Technological University Hyderabad (JNTUH), Kukatpally-500 085, Hyderabad, Telangana
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State, India.
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cDepartment of Pharmacy, School of Applied Sciences, University of Huddersfield,
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Huddersfield, HD1 3DH UK.
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dDepartment of Chemistry, University of Washington, Seattle, WA 98195, USA
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E mail: mohanrao59@gmail.com
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Abstract
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Half sandwich ruthenium, rhodium and iridium complexes containing pyridyl chalcone
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analogues (L1 and L2) are prepared by the reaction of [(arene)M(µ-Cl)Cl]2 (arene = benzene, p-
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cymene, Cp*) and
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mononuclear complexes (1-8) were obtained and characterized using FT-IR, 1H-NMR, 13C-
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NMR, ESI mass and UV-Vis spectroscopic methods. The molecular structures of complexes 2,
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4, 5 and 7 are established by single crystal X-ray diffraction studies. Antibacterial studies were
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tested against three strains of bacterial microorganisms Staphylococcus aureus (gram +ve),
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Klebsiella pneumoniae (gram -ve) and Escherichia coli (gram -ve). Further the cytotoxicity study
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of the pyridyl chalcone derivatives and their complexes were evaluated against the human
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colorectal cancer cell lines HT-29, HCT-116 p53+/+, HCT-116 p53-/- and ARPE-19 (non-cancer
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retinal epithelium).
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___________________________________________________________________________
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Keywords: ruthenium, rhodium, iridium, pyridyl chalcone, antibacterial, anticancer
(M =Ru, Rh/Ir)] with L1 and L2 in 1:2 (M:L) ratio. Eight neutral
2
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1. Introduction
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Cancer is one of the major causes of death in both developed and developing countries
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[1]. Although the availability of drugs has increased over recent years, mortality rates remain
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high and long-term responses are thwarted by problems of toxicity and the emergence of
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resistance [2]. In recent years, there has been a resurgence interest in organometallic complexes
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that have different modes of action compared to the platinates [3]. In our quest to find more
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effective treatments for cancer, other metal-based compounds incorporating ruthenium, rhodium
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and iridium have been developed and these have shown promising activity [4]. High selectivity
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of ruthenium complexes towards cancer cells rather than healthy cells and their stable oxidation
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states under bodily conditions showed that they are promising antitumor agents [5]. The
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biological activity of the metal complexes of ruthenium, rhodium and iridium can be a
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consequence of the coordination or intercalation mode of binding to the DNA [6]. Some of the
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arene ruthenium complexes prepared by Sadler et al. showed promising anticancer activity both
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in vitro and in vivo [7]. The anticancer activities of arene ruthenium complexes can be enhanced
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based on the ligand scaffolds, which play an important role in controlling their activity such as
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improving their water solubility. For example, bioactive compounds such as flavonoids,
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isoflavonoids etc., can be incorporated to arene Ru(II) complexes to enhance their anticancer
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activities [8]. Also, bioactive ligand scaffolds such as chalcone when combined with these arene
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metal complexes exhibit better anticancer activity [9].
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The wide range of biological activities associated with chalcone based compounds, both
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natural and synthetic, their ease of preparation, the potential of oral administration, safety and
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profound natural abundance have led us to explore their therapeutic potential when combined
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with metal complexes. Present-day studies have identified different chalcones and their hybrids
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as the active component for anticancer and antibacterial activity. The increasing incidence of
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infection caused by the rapid development of bacterial resistance to most of the known
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antibiotics is a serious health problem [10]. Thus, research efforts for finding effective nature-
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derived therapeutics against these multidrug-resistant microbes are required. Mai et al. have
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reported a series of chalcone derivatives where -NH2 group on ring A (Chart 1) play an important
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role in the anti-proliferative effect against HT-29 cancer cell [11]. However, in this work, ring A
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contains either -NH2 group or -OH group and ring B is replaced with pyridyl substituent.
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Keeping in mind the anti-proliferative effect of -NH2 substituent on ring A of chalcone
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derivatives we are interested to explore this possibility by complexing pyridyl chalcone
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derivatives (Chart 1) with arene ruthenium, rhodium and iridium complexes. The initial studies
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designed to assess their cytotoxic potency against cancer and non-cancer cells are described.
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Because of the reported activity of chalcones against microbes, the activity of these complexes
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against bacterial strains is also reported.
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Chart 1: Ligands used in this study
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2. Experimental Section
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2.1 Physical methods and materials
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All the reagents were purchased from commercial sources and used as received. 3-
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aminopyridine, 2-aminoacetophenone, 2-hydroxyacetophenone were obtained from Aldrich. The
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solvents were purified and dried according to standard procedures. The starting precursor metal
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complexes [Cp*MCl2]2 (M = Rh/Ir) were prepared by a new procedure using Anton Paar
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Monowave 50 synthesis reactor. Infrared spectra were recorded on a Perkin-Elmer 983
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spectrophotometer by using KBr pellets in the range of 400-4000 cm-1. 1H NMR spectra were
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recorded on a Bruker Avance II 400 MHz spectrometer using DMSO-d6 and CDCl3 as solvents.
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Absorption spectra were recorded on a Perkin-Elmer Lambda 25 UV/Visible spectrophotometer
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in the range of 200-800 nm at room temperature in acetonitrile. Mass spectra were recorded
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using Q-T of APCI-MS instrument (model HAB 273). Perkin-Elmer 2400 CHN/S analyzer was
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used for elemental analyses of the complexes. All these mononuclear metal complexes were
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synthesized and characterized by using FT-IR, 1H NMR, 13C-NMR, ESI mass, CHN, UV-Vis,
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and Single-crystal X-ray diffraction techniques.
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2.2 Single-crystal X-ray structures analyses
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Single crystal X-ray diffraction data for the complexes (2), (4), (5) and (7) were collected
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on an Oxford Diffraction Xcalibur Eos Gemini diffractometer at 293 K using graphite
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monochromated Mo-Kα radiation (λ = 0.71073 Å). Suitable crystals were selected and each
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mounted on a glass fiber. The strategy for the data collection was evaluated using the
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CrysAlisPro CCD software [12]. Crystal data were collected by standard ‘‘phi–omega scan’’
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techniques and were scaled and reduced using CrysAlisPro RED software. The structures were
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solved by direct methods using SHELXS-97 and refined by full-matrix least-squares with
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SHELXL-97 refining on F2 [13, 14]. The positions of all the atoms were obtained by direct
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methods. Metal atoms in the complex were located from the E-maps and non-hydrogen atoms
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were refined anisotropically. The hydrogen atoms bound to the carbon were placed in
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geometrically constrained positions and refined with isotropic temperature factors, generally 1.2
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Ueq of their parent atoms. Figure 1 was drawn with the ORTEP3 program [15]. Figures 2-5 were
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drawn with the MERCURY3.6 program [16].
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2.3 Cell lines testing, culture condition and cytotoxicity studies
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The in vitro cytotoxicity of the pyridyl chalcone ligands (L1 and L2) and their
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corresponding arene d6 metal complexes were performed at the University of Huddersfield
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against the HCT-116 p53+/+, HCT-116 p53-/- and HT-29 human colorectal cancer lines. To
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compare the activity of complexes against cancer cells compared to non-cancer cells, complexes
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were also evaluated against the retinal epithelium cell line ARPE-19. HT-29 and ARPE-19 cells
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were originally purchased from ATCC and HCT-116 cells (containing wild type p53 or deleted
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p53) were obtained from Professor Bert Vogelstein's laboratory [17]. All reagents used were
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purchased from Sigma Aldrich Co. Ltd (Dorset, UK) unless otherwise stated. Antiproliferative
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activity of the compounds was evaluated using the standard MTT (3-(4,5-dimethylthiazol-2-yl)-
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2,5-diphenyltetrazolium bromide) cellular viability assay as described elsewhere [18]. Briefly,
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cells were seeded into 96 well plates of 1.5 x 103 cells per well and incubated for 24 hours at
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37oC in an atmosphere of 5% CO2 before drug exposure. Generally, a stock solution was freshly
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prepared by dissolving each of the compounds in DMSO at a concentration of 100 mM. The
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highest concentration of drug tested was 100M and the final DMSO concentration applied to
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cells was 0.1% (v/v), which is nontoxic to cells. Cisplatin was dissolved in phosphate-buffered
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saline at a stock concentration of 25 mM. The cells were exposed to a range of drug
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concentrations for 96 hours and cell survival was determined using the MTT assay [18, 19].
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Following drug exposure, 20 μL of MTT (0.5 mg/mL) in phosphate-buffered saline was added to
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each well and it was further incubated at 37 °C for 4 hours in an atmosphere containing 5% CO2.
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The solution was then removed and the formed formazan crystals were dissolved in 150 μM
5
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DMSO. The absorbance of the resulting solution was recorded at 550 nm using an ELISA
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spectrophotometer. The percentage of cell survival was calculated by dividing the true
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absorbance of the treated cell by the true absorbance for controls (exposed to 0.1% DMSO). The
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IC50 values presented in Table 1 were determined from plots of percentage survival against drug
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concentration. Each experiment was performed in triplicate and a mean value obtained and stated
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as IC50 (μM) ± SD. To compare the response of non-cancer cells to cancer cells, the selectivity
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index (SI) presented in Table 2 was also calculated which is defined as the IC50 for ARPE 19
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cells divided by the IC50 for each cancer cell line. Values >1 indicate that complexes have
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selective activity against cancer compared to non-cancer cells in vitro.
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2.4
In vitro antimicrobial evaluation
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All the Gram-negative and Gram-positive bacterial strains used for the present study were
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obtained from the Department of Microbiology, Osmania General Hospital, Hyderabad. All
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strains were tested for purity by standard microbiological methods. The bacterial stock cultures
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were maintained on Mueller-Hinton agar slants and stored at 4˚C. An agar-well diffusion method
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[20] was employed for the evaluation of antibacterial activities of test compounds. DMSO was
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used as a negative control. The bacterial strains were reactivated from stock cultures by
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transferring into Mueller-Hinton broth and incubating at 37 ˚C for 18 h. A final inoculum
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containing 106 colonies forming units (1 x 106 CFU/mL) was added aseptically to MHA medium
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and poured into sterile petri dishes. Different test compounds at a concentration of 200 µg per
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well were added to wells (8 mm in diameter) punched on an agar surface. Plates were incubated
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overnight at 37 ºC and the diameter of inhibition zone (DIZ) around each well was measured in
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mm. Experiments were performed in triplicates and these data were presented in Table 3.
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The minimum inhibitory concentration (MIC) and minimum bactericidal concentration
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(MBC) was determined by the micro-broth dilution method done in 96 well plates according to
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the standard protocol [21]. A 2-fold serial dilution of the compounds, with the appropriate
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antibiotic, was prepared. Initially, 100 µl of MH broth was added to each well plate. Then 100 µl
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of compound or antibiotic was taken from the stock solution and dissolved in the first well plate.
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Serial dilution was done to obtain different concentrations. The stock concentrations of 2.0
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mg/ml 24 hours culture turbidity was adjusted to match 0.5 McFarland standards which
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correspond to 1×108 CFU/ml. The standardized suspension (100 µl) of bacteria was added to all
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the wells except the antibiotic control well and the 96 well plates were incubated at 37 °C for 24
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h. After 24 h of incubation 40 µl of MTT (3-(4,5-dimethlthiazol-2-yl)-2,5-diphenyltrazolium
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bromide) reagent (0.1 mg/ml in 1x PBS) was added to all the wells. MIC was taken as the lowest
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concentration which did not show any growth which was visually noted from the blue color
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developed by MTT. Subcultures were made from clear wells and the lowest concentration that
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yielded no growth after subculturing was taken as the MBC. The MIC and MBC values of tested
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compounds were presented in Table 4.
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2.5 Synthesis of rhodium and iridium dimer
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In a sample test tube of size 10 ml 500 mg of RhCl3/IrCl3.nH2O, 0.4 ml of Cp* and 3 ml of
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dry methanol were added and mix thoroughly. A small size Teflon coated magnetic stirrer was
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inserted for stirring purpose. The mixture was sealed tightly and placed into an Anton Paar
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Monowave 50 synthesis reactor. The reaction condition was adjusted by setting the temperature
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to 110 oC and pressure will reach around 20 bars over 45 minutes. The instrument takes about 2-
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3 minutes to heat up to the set temperature and the reaction proceeds smoothly for 45 minutes.
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On completion, the reaction cools down to a temperature of 60 oC. A red-orange crystalline solid
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was obtained. The solvent was decanted, washed three times with diethyl ether and air-dried.
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Yield: 87% for Rhodium dimer and 90% for Iridium dimer
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2.6
General procedure for the synthesis of metal complexes (1-8)
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To a solution of metal precursor [(arene)MCl2]2 (arene = p-cymene / benzene) and
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[Cp*MCl2]2 (M = Rh/Ir) complexes (0.1 mmol), pyridyl chalcone analogue (L1 and L2) (0.2
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mmol) were added and stirred at room temperature in dry methanol (10 ml) for 5 hours (Scheme
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1). The product starts to precipitate after 4 hours of stirring and was allowed to stir for another
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one hour for the overall conversion of the reactant into the desired product. The solid precipitate
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was centrifuged, washed thoroughly with diethyl ether and air-dried.
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Scheme 1: Schematic representation for the synthesis of ligands and complexes 1-8
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[(p-cymene)Ru(к1(N)-L1)Cl2] (1)
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2.6.1
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Color: Yellow; Yield: 81%; FT-IR (KBr, cm-1): 3406 (ʋN-H), 3291 (ʋN-H), 1651 (ʋC=O), 1616-1584
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(ʋC=N); 1H NMR (400 MHz, DMSO-d6) δ 9.07 (d, J = 4 Hz, 1H), 8.68 (d, J = 4 Hz, 1H), 8.43 (d,
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J = 8 Hz, 1H), 8.21 – 8.17 (m, 2H), 7.74 (d, J = 16 Hz, 1H), 7.57 (dd, J = 4, 4 Hz, 1H), 7.38 (t, J
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= 8 Hz, 1H), 6.89 (d, J = 8 Hz, 1H), 6.68 (t, J = 8 Hz, 1H), 5.91 (d, J = 4 Hz, 2H), 5.87 (d, J = 4
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Hz, 2H), 2.91 (sept, 1H), 2.17 (s, 3H), 1.27 (d, J = 8 Hz, 6H); ESI-MS (m/z): 459.21 [M-Cl]+-
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HCl; UV-Vis {Acetonitrile, λmax nm (ε/10-4 M-1 cm-1)}: 239 (4.896), 292 (5.588), 401 (2.013).
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2.6.2 [(benzene)Ru(к1(N)-L1)Cl2] (2)
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Color: Yellow; Yield: 78%; FT-IR (KBr, cm-1): 3421 (ʋN-H), 3312 (ʋN-H), 1650 (ʋC=O), 1615-1589
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(ʋC=N); 1H NMR (400 MHz, DMSO-d6): δ 9.23 (s, 1H), 8.73 (d, J = 8 Hz, 2H), 8.23 (d, J = 16
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Hz, 1H), 8.12 (d, J = 8 Hz, 1H), 7.83 (t, J = 8 Hz, 1H), 7.69 (d, J = 16 Hz, 1H), 7.30 (t, J = 8 Hz,
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1H), 6.81 (d, J = 8 Hz, 1H), 6.59 (t, J = 8 Hz, 1H), 5.95 (s, 6H); 13C NMR (100 MHz, DMSO-
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d6): δ = 189.6, 152.1, 144.7, 144.4, 140.7, 136.0, 134.7, 131.5, 127.7, 116.9, 114.5, 87.5; ESI-
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MS (m/z): 403.03 [M-Cl]+-HCl; UV-Vis {Acetonitrile, λmax nm (ε/10-4 M-1 cm-1)}: 240 (3.285),
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291 (3.806), 402 (1.359).
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2.6.3 [Cp*Rh(к1(N)-L1)Cl2] (3)
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Color: Orange; Yield: 85%; FT-IR (KBr, cm-1): 3423 (ʋN-H), 3308 (ʋN-H), 1652 (ʋC=O), 1615-1584
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(ʋC=N); 1H NMR (400 MHz, DMSO-d6) δ 8.92 (s, 1H), 8.49 (d, J = 4 Hz, 1H), 8.39 (d, J = 8 Hz,
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1H), 7.97 (d, J = 16 Hz, 1H), 7.90 (d, J = 8 Hz, 1H), 7.50 (d, J = 8 Hz, 1H), 7.46 (d, J = 16 Hz,
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1H), 7.09 (t, J = 8 Hz, 1H), 1.40 (s, 15H); ESI-MS (m/z): 461.24 [M-Cl]+-HCl; UV-Vis
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{Acetonitrile, λmax nm (ε/10-4 M-1 cm-1)}: 233 (4.831), 283 (3.675), 402 (1.540).
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[Cp*Ir(к1(N)-L1)Cl2] (4)
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2.6.4
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Color: Yellow; Yield: 83%; FT-IR (KBr, cm-1): 3430 (ʋN-H), 3312 (ʋN-H), 1652 (ʋC=O), 1615-1583
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(ʋC=N); 1H NMR (400 MHz, DMSO-d6) δ 9.00 (s, 1H), 8.60 (d, J = 4 Hz, 1H), 8.37 (d, J = 8 Hz,
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1H), 8.12-8.08 (m, 2H), 7.64 (d, J = 16 Hz, 1H), 7.50 (dd, J = 4, 4 Hz, 1H), 7.28 (t, J = 8 Hz,
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1H), 6.80 (d, J = 12 Hz, 1H), 6.58 (t, J = 8 Hz, 1H), 1.62 (s, 15H); 13C NMR (100 MHz, DMSO-
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d6 + CDCl3): δ = 198.75, 150.43, 134.00, 130.36, 124.51, 116.92, 114.89, 92.16, 85.18, 8.17;
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ESI-MS (m/z): 551.30 [M-Cl]+-HCl; UV-Vis {Acetonitrile, λmax nm (ε/10-4 M-1 cm-1)}: 235
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(3.212), 290 (3.532), 398 (1.157).
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2.6.5 [(p-cymene)Ru(к1(N)-L2)Cl2] (5)
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Color: Yellow; Yield: 86%; FT-IR (KBr, cm-1): 3447 (ʋO-H), 1637 (ʋC=O), 1607-1581 (ʋC=N); 1H
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NMR (400 MHz, DMSO-d6) δ 12.48 (s, 1H), 9.14 (s, 1H), 8.72 (d, J = 4 Hz, 1H), 8.47 (d, J = 8
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Hz, 1H), 8.35 (d, J = 8 Hz, 1H), 8.26 (d, J = 16 Hz, 1H), 7.95 (d, J = 16 Hz, 1H), 7.68 (t, J = 8
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Hz, 1H), 7.61 (t, J = 8 Hz, 1H), 7.13-7.10 (m, 2H), 5.91 (d, J = 4 Hz, 2H), 5.87 (d, J = 4 Hz, 2H),
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2.91 (hept, J = 6.7 Hz, 1H), 2.17 (s, 3H), 1.27 (d, J = 8 Hz, 6H); ESI-MS (m/z): 460.23 [M-Cl]+-
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HCl; UV-Vis {Acetonitrile, λmax nm (ε/10-4 M-1 cm-1)}: 210 (6.895), 305 (6.406), 348 (2.558).
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2.6.6 [(benzene)Ru(к1(N)-L2)Cl2] (6)
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Color: Yellow; Yield: 78%; FT-IR (KBr, cm-1): 3445 (ʋO-H), 1647 (ʋC=O), 1585-1506 (ʋC=N); 1H
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NMR (400 MHz, DMSO-d6): δ 12.37 (s, 1H, OH), 9.03 (s, 1H), 8.62 (d, J = 4 Hz, 1H), 8.25 (d, J
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= 8 Hz, 1H), 8.12 (d, J = 12 Hz, 1H), 7.85 (d, J = 16 Hz, 1H), 7.57 (d, J = 8 Hz, 2H), 7.51 (dd, J
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= 4, 4 Hz, 1H), 7.04-6.99 (m, 3H), 5.95 (s, 6H); 13C NMR (100 MHz, DMSO-d6): δ = 193.2,
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161.7, 151.2, 150.5, 141.1, 136.4, 135.2, 130.9, 130.2, 128.2, 123.7, 120.7, 119.2, 117.7, 85.5;
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ESI-MS (m/z): 404.05 [M-Cl]+-HCl; UV-Vis {Acetonitrile, λmax nm (ε/10-4 M-1 cm-1)}: 201
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(7.565), 305 (5.061), 348 (2.005).
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2.6.7 [Cp*Rh(к1(N)-L2)Cl2] (7)
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Color: Orange; Yield: 82%; FT-IR (KBr, cm-1): 3435 (ʋO-H), 1647 (ʋC=O), 1593-1489 (ʋC=N); 1H
220
NMR (400 MHz, DMSO-d6): δ 12.69 (s, 1H), 9.39 (s, 1H), 9.13 (s, 1H), 8.14 (d, J = 8 Hz, 1H),
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8.03 (d, J = 8 Hz, 1H), 7.97 (d, J = 16 Hz, 2H), 7.87 (d, J = 16 Hz, 1H), 7.66 (t, J = 8 Hz, 1H),
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7.57 (t, J = 8 Hz, 1H), 7.17 (d, J = 8 Hz, 1H), 7.10 (t, J = 8 Hz, 1H), 1.74 (s, 15H); UV-Vis
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{Acetonitrile, λmax nm (ε/10-4 M-1 cm-1)}: 208 (6.325), 306 (5.466), 348 (2.361).
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2.6.8 [Cp*Ir(к1(N)-L2)Cl2] (8)
9
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Color: Yellow; Yield: 83%; FT-IR (KBr, cm-1): 3433 (ʋO-H), 1647 (ʋC=O), 1588-1491 (ʋC=N); 1H
226
NMR (400 MHz, DMSO-d6) δ 12.38 (s, 1H), 9.03 (s, 1H), 8.62 (d, J = 8 Hz, 1H), 8.37 (d, J = 8
227
Hz, 1H), 8.25 (d, J = 8 Hz, 1H), 8.16 (d, J = 16 Hz, 1H), 7.85 (d, J = 16 Hz, 1H), 7.58 (t, J = 8
228
Hz, 1H), 7.50 (dd, J = 4, 4 Hz, 1H), 7.03 – 7.00 (m, 2H), 1.62 (s, 15H); 13C NMR (100 MHz,
229
DMSO-d6 + CDCl3): δ = 193.19, 162.27, 150.96, 150.35, 141.19, 136.31, 135.15, 130.18,
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123.70, 123.15, 118.90, 117.66, 91.96, 8.18; UV-Vis {Acetonitrile, λmax nm (ε/10-4M-1 cm-1)}:
231
210 (6.088), 305 (6.088), 348 (2.683).
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3. Results and Discussion
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3.1 Synthesis of complexes
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In the present work, we have carried out the synthesis and biological activity evaluation of metal
235
complexes of ruthenium, rhodium and iridium bearing pyridyl chalcone derivatives. Pyridyl
236
chalcone derivatives (Scheme 1) were obtained following the procedure reported in the literature
237
[22]. Treatment of [(arene)Ru(µ-Cl)Cl]2, (arene = benzene, p-cymene), [Cp*M(µ-Cl)Cl]2 (M=Rh
238
and Ir) with ligand (L1 or L2) in 1:2 (M:L) ratio has yielded a series of neutral monodentate
239
mononuclear complexes 1-8 with the chemical formula [(arene)M{κ1(N)L1/L2}Cl2]. Despite
240
having extra binding sites of ligands towards metal, these ligands bind exclusively through
241
pyridyl nitrogen. Ruthenium and iridium complexes are yellow in color while rhodium
242
complexes are orange in color. These complexes are stable in the air as well as in solution and
243
they are soluble in MeOH and partially soluble in dichloromethane, chloroform and acetonitrile
244
and insoluble in solvents like hexane, diethyl ether and petroleum ether. The analytical data of
245
these compounds are consistent with the formulations. All complexes were fully characterized by
246
1H NMR, 13C NMR, IR, CHN and Mass spectroscopy. The molecular structure of the complexes
247
determined by single-crystal X-ray diffraction method, revealed the coordination of the metals to
248
the ligands (L1 and L2) only through the pyridyl nitrogen atom.
249
3.2
Spectral Studies of complexes (1-8)
250
3.2.1
Infrared Spectra (IR) of ligands and complexes
251
Information on the nature of the functional group attached to the metal atom was obtained
252
using IR spectroscopy. The ligand L1 IR spectrum displayed two bands at 3413 and 3284 cm-1
253
for the NH2 group while ligand L2 displayed one broadband at 3447 cm-1 for the OH group. Both
254
the carbonyl group of the ligands displayed a strong band at around 1648-1653 cm-1. All the
255
complexes exhibited characteristic bands corresponding to C=N, C=O, C=C, OH and NH2
10
256
stretching frequencies. The NH2 frequencies were observed in the range of 3150-3480 cm-1. The
257
C=N and C=C bond vibrated at a higher frequency region as compared to the free ligand around
258
1583-1616 cm-1 and 1450-1546 cm-1 indicating the coordination of the metals to the ligands
259
through the pyridine ring.
260
3.2.2
1H-NMR spectra of complexes
261
The 1H-NMR spectra of the complexes displayed signals associated with the ligand
262
protons and signals due to p-cymene and Cp* ring protons. The 1H NMR spectra of the ligand
263
L1 displayed one singlet at 9.40 ppm assigned to the CH proton of the pyridine ring, the NH2
264
proton signals were not observed due to solvent exchange with DMSO-d6, the trans-CH protons
265
with J = 16 Hz coupling constant were observed as a doublet at 7.68 and 8.26 ppm respectively
266
and the aromatic protons of the ligand L1 were observed in the downfield region around 6.55-
267
8.96 ppm. The 1H NMR spectra of the ligand L2 displayed one singlet at 12.68 ppm assigned to
268
the OH proton, a singlet at 8.89 ppm assigned to the CH proton of the pyridine ring, the trans-CH
269
protons with J = 16 Hz coupling constant were observed at 7.73 and 7.90 ppm respectively and
270
the aromatic protons of the ligand L2 were observed in the downfield region around 6.95-8.89
271
ppm. To further reveal the coordination behavior of these ligands to metals and the formation of
272
complexes, 1H NMR analyses of all these complexes were recorded in deuterated DMSO-d6
273
solvent at room temperature. The ligand aromatic protons of complexes 1-8 displayed the same
274
splitting pattern with a slight shift of proton signals towards the downfield or upfield region
275
which resulted from coordination of the metals to the ligand. The binding of the pyridyl chalcone
276
ligand to the ruthenium atom for complex 1 and 5 was confirmed by the distinct splitting of the
277
p-cymene ring protons upon coordination of the ligand to the p-cymene moiety. The signals
278
associated with the p-cymene ligand consisted of two doublets around 5.86-5.91 ppm for the ring
279
protons, one singlet at 2.17 ppm for the methyl protons and one doublet at 1.27 ppm for the
280
isopropyl group. Also, the methine proton of the p-cymene group exhibited septet at around
281
2.86-2.96 ppm. Ruthenium benzene complexes 2 and 6 displayed one singlet at 5.95 assigned to
282
the CH protons of the benzene ring. Rhodium and iridium complexes 3, 4, 7 and 8 bearing Cp*
283
analog displayed one singlet in the range of 1.40-1.74 ppm. The NH2 proton signals of the
284
complexes 1-4 were not observed due to solvent interaction with DMSO-d6 whereas the OH
285
proton signals of complexes 5-8 were observed in the range of 12.37-12.69 ppm. The 1H NMR
286
of all these complexes were given in supplementary data (Figure S1 to S10).
11
287
3.2.3
13
C-NMR spectra of complexes
288
The 13C-NMR spectra of the complexes further confirmed the formation and coordination
289
of the metals to the ligands. The 13C-NMR spectra of the complexes displayed signals associated
290
with the carbon of the ligands, the p-cymene moiety, and the Cp* group. The aromatic signals
291
for the ligand part of the complexes were observed in the range of 114.5-162.4 ppm. The
292
carbonyl group carbon of the complexes displayed a signal around 189.6-198.7 ppm. The ring
293
carbons of the p-cymene moiety displayed signals around 82.9-106.8 ppm whereas the methyl,
294
methine and isopropyl carbons signals were observed around 17.8-29.9 ppm. The benzene ring
295
carbons of the ruthenium benzene complexes displayed signals around 87.5-87.5 ppm. The Cp*
296
methyl carbons signal was observed around 8.1 ppm and the Cp* ring carbons signal was
297
observed at 91.9-92.1 ppm. These data are in good agreement with the previously reported
298
complexes done by our group [23] thus supporting the formation of the complexes. The 13C-
299
NMR spectra of some of the complexes were given in supplementary data (Figure S11 to S14).
300
3.2.4
Mass spectra of complexes
301
The mass spectra of the complexes further confirmed the formation of metal complexes.
302
The mass spectra of all the complexes except for complex 2 exhibited their predominant
303
molecular ion peaks at m/z value, which corresponds to [M-Cl]+-HCl ion peak. For instance, the
304
mass spectrum of complexes 1 displayed its predominant molecular ion peak at m/z: 459.21,
305
similarly for complexes 3, 4, 5 and 6 displayed their predominant molecular ion peak at m/z:
306
461.24, 551.30, 460.23 and 404.05 respectively which corresponds to [M-Cl]+-HCl ion peak. In
307
complex 2 the molecular ion peak was observed at m/z: 224.93, which is due to [M-Cl]+-HCl-
308
Ru-benzene ion peak. The mass ion peaks observed in these complexes are in accordance with
309
similar reported complexes [23]. The mass spectra of some of the complexes were given in
310
supplementary data (Figure S19 to S24).
311
3.2.5
UV-visible spectra of complexes
312
The electronic spectra of the monodentate mononuclear pyridyl chalcone complexes were
313
recorded in acetonitrile at 10-4 M concentration at room temperature and the respective plots are
314
shown in (Figure S25). The electronic spectra of the mononuclear complexes display two
315
absorption bands in the higher energy region around 230-240 nm which can be assigned as
316
ligand centered or intra ligand π-π* and low energy band at 290-305 nm corresponding to n-π*
317
transition [24, 25]. Medium intensity band at 340-410 nm were also observed corresponding to
12
318
metal to ligand charge transfer where from Ru (4d) orbitals to the low-lying empty orbitals π*
319
orbitals of the ligand. The low spin Rh(III) and Ir(III) complexes provide filled dπ (t2g) orbitals
320
which can interact with low lying π* orbitals of the pyridyl chalcone ligands and therefore we
321
can expect a band attributable to metal to ligand charge transfer MLCT band.
322
3.3.
Description of the molecular structures of complexes
323
The solid-state structures of some of the mononuclear complexes were established by
324
single-crystal X-ray crystallography. The ORTEP view of the complexes along with the atom
325
numbering scheme is shown in Figure 1. The summary of the crystal data, data collection and
326
structure refinement parameters are summarized in Table S1. Selected bond lengths, bond angles
327
and metal atom involving ring centroid values are listed in Table S2.
328
Single crystal analyses for the complexes were carried out to have a deeper understanding
329
of the geometry of the complexes. By carrying out single-crystal analyses of the complexes we
330
were able to confirm the bonding modes associated with the ligand. Single crystals suitable for
331
X-ray diffraction analysis were obtained for complexes 2, 4, 5 and 7. These crystals are yellow,
332
orange and red in color and were obtained by the solvent diffusion method for all the complexes.
333
In all the complexes with both ligands, the preferable mode of coordination of the metal is
334
through pyridine nitrogen of the pyridyl chalcone forming monodentate mononuclear complexes.
335
All these half-sandwich complexes adopt a typical three-legged “piano-stool” geometry in which
336
the metal center is coordinated through one nitrogen donor atoms from the pyridine ring of the
337
ligand and two terminal chloride which represents the three-leg of a piano while the arene ring
338
(arene = p-cymene, benzene, Cp*) represent the seat of a piano. The molecular structure of these
339
mononuclear complexes strongly supports the formation of these complexes and the coordination
340
of ligands that occur through the pyridine nitrogen N(1) forming monodentate complexes (Figure
341
1). Complexes 2, 4 and 7 crystallizes in monoclinic system with P21/n and Cc space group while
342
complex 5 crystallizes in a triclinic system with P1̄ space group. The distance between the metal
343
to the centroid of the p-cymene/Cp* ring of complexes 2, 4, 5 and 7 is 1.657 Å, 1.779 Å, 1.667 Å
344
and 1.783 Å respectively. The M(1)-N(1) bond distances in these mononuclear complexes are in
345
the range of 2.116-2.146 Å. The M(1)-Cl(1) bond distances for complexes 2, 4 and 7 are in the
346
range of 2.410-2.4170 Å while that of complex 5 were found to be slightly longer at 2.4320(19)
347
Å. The M(1)-Cl(2) bond distances for complexes 2, 4 and 7 are in the range of 2.4167-2.439 Å
348
while that of complex 5 were found to be slightly shorter at 2.402(2) Å. These data are consistent
13
349
with the previously reported complexes of pyridyl-base ligands [26, 27]. The carbonyl (C=O)
350
bond distances for complexes 2, 4 and 7 are in the range of 1.228-1.247 Å, whereas complex 5
351
carbonyl bond distance is found to be slightly longer at 1.370(13) Å. The bond angle values
352
Cl(1)-M(1)-Cl(2) of these complexes are in the range of 86.99º-91.65º and the Cl(1)-M(1)-N(1)
353
and Cl(2)-M(1)-N(1) bond angle is also found to be in the range of 85.44º-88.22º which are
354
consistent with the piano stool arrangement of various groups about the metal center and is
355
comparable to previously reported values [26, 28].
356
3.4.
Non-covalent interaction
357
From the crystal packing of some of the complexes, it was observed that complex (2)
358
possessed intramolecular hydrogen bonding N-H∙∙∙∙∙O with 2.024 Å bond distance and 134.38º
359
bond angle. Non-covalent interaction C-H∙∙∙∙∙Cl with 2.774 Å bond distance and 143.76º was
360
observed between the CH group from the trans-CH=CH of ligand and chloride atom (Figure 2).
361
Interestingly the crystal packing in complex (2) formed a dimeric unit via π-π stacking (3.582 Å)
362
interaction known as supramolecular interaction. Complex 4, on the other hand, possessed
363
intramolecular hydrogen bonding N-H∙∙∙∙∙O with 2.010 Å bond distance and 128.93º bond angle
364
and intermolecular hydrogen bonding C-H∙∙∙∙∙Cl with 2.766 Å bond distance and 140.66º bond
365
angle. C-H∙∙∙∙∙ π interaction involving the methyl C-H of the cp* ring and the phenyl ring of the
366
ligand was also observed H3C∙∙∙∙∙H (4.861 Å) (Figure 3). Further, the crystal structure of complex
367
(5) crystallized with one CH3OH molecule which formed one intramolecular hydrogen bonding
368
O-H∙∙∙∙∙O with 1.804 Å bond distance and 146.61º bond angle and four different types of non-
369
covalent C-H∙∙∙∙∙Cl (2.852, 2.931, 2.613 and 2.884 Å) interactions between chloride of the metal
370
center and hydrogen atom from ligand and methanol molecule (Figure 4). Apart from these
371
interactions complex 5 displayed interaction between the solvent of crystallization (CH3OH)
372
oxygen and the hydrogen from the pyridine ring of the ligand forming inter hydrogen bonding
373
O∙∙∙∙∙H (2.613 Å).
374
3.5.
375
The response of cell lines to complexes 1-8, ligands 1-2 and cisplatin are presented in Figure 5.
376
Complexes 6-8 were inactive against all four cell lines at the highest dose tested (100 M)
377
whereas complex 5 and ligand 2 were moderately toxic to cells. In both cases, the activity of
378
complex 5 and ligand 2 was greater against ARPE-19 non-cancer cells (except for HCT-116 p53-
379
/-
Cytotoxicity studies against cancer cell lines
cells treated with ligand 2). This is reflected in the poor selectivity indices presented in Figure
14
380
6. In sharp contrast, ligand L1 and complexes 1-4 were potent cytotoxic agents with comparable
381
IC50 values to cisplatin. Except for complex 1, complexes 2-4 and ligand 1 showed comparable
382
or enhanced selectivity for cancer as opposed to non-cancer cells. Of particular interest is the
383
observation that HCT-116 p53-/- cells are less responsive to cisplatin than HCT-116 with wild
384
type p53 (Figure 5). In contrast, complexes 2-4 remain active against HCT-116 cells with
385
defective p53 and consequently retain their good selectivity index for these cancer cells
386
compared to ARPE-19 cells (Figure 6). As colorectal tumors with mutant or dysfunctional p53
387
are widely regarded as chemotherapy-resistant more aggressive cancers [29] this observation is
388
potentially significant and worthy of further investigation. In general the tested compounds for
389
anticancer activity against HCT-116 p53+/+, HCT-116 p53-/- and HT-29 human colorectal cancer
390
cell lines and were found that ligand L1 and its complexes 1-4 show excellent activity. Ligand
391
L2 and complex 5 displayed moderate activity whereas complexes 6-8 lacked activity even at a
392
higher dose (>100 µM). Furthermore, ligand L1 and complexes 2, 3 and 4 displayed a level
393
selectivity comparable to cisplatin. Mai et al. reported chalcone derivatives containing -NH2
394
group on ring A and phenyl group on ring B showed better cytotoxicity activity with IC50 =
395
4.39µM against HT-29 cancer cell [11]. However, in this work when ring A of chalcone
396
derivatives contain -NH2 group and ring B is replaced with pyridyl substituent an improved
397
cytotoxicity activity with IC50 = 2.10µM against HT-29 cancer cell was observed which is even
398
better than that of cisplatin. Hence, we can conclude that a slight change in the structure of the
399
compound can have a significant effect on the activities of the whole ligand and complexes.
400
Also, ligand L1 and ligand L2 differ only at ring A with R= NH2 for L1 and R= OH for L2
401
whereas the activity of L1 is 5 to 10 times more than that of L2.
402
3.6.
In vitro antimicrobial activity of complexes and ligands
403
The synthesized ligands and complexes were evaluated for their in-vitro antibacterial
404
activity against gram-positive; Staphylococcus aureus and gram-negative; Escherichia coli,
405
Klebsiella pneumoniae strains by using standard techniques. The zones of inhibition (mm) in
406
comparison with ciprofloxacin were given in Table (3) and the chart representation was given in
407
Figure 7. All the compounds exhibited potent antibacterial activity against the tested organisms.
408
In-vitro assay results revealed that complex 5 (17 ± 0.58 mm) and complex 7 (16 ± 0.56 mm)
409
have better activity against gram-positive (Staphylococcus aureus). Complex 5 (17 ± 0.62 mm)
410
and complex 7 (16 ± 0.68 mm) also showed highest activity against gram-negative (Escherichia
15
411
coli) while complex 5 (16 ± 0.45 mm) and complex 7 (15 ± 0.35 mm) showed moderate activity
412
against gram-negative (Klebsiella pneumoniae).
413
The minimum inhibitory concentration (MIC) and minimum bactericidal concentration
414
(MBC) results were listed in Table 4 and their chart representation was given in Figure 8. The
415
MIC & MBC values of the compounds ranged from 0.125 to 1.0 mg/mL against all three
416
organisms. Complex 3 and complex 7 values ranged from 0.125 to 0.25 mg/mL for S. aureus, E.
417
coli and Klebsiella pneumoniae. The MIC & MBC values of ciprofloxacin ranging from 0.031 to
418
0.062 mg/mL and 0.062 to 0.0125 mg/mL against the tested organisms were taken as standard.
419
4. Conclusion:
420
All together eight new complexes have been synthesized. All the complexes were isolated as
421
neutral compounds. The ligands and complexes were obtained in good yields and were
422
characterized by analytical and spectral methods. Single crystal X-ray diffraction study reveals
423
that the pyridyl chalcone ligands coordinated to the metal center only through the nitrogen atom
424
of the pyridine ring forming neutral monodentate complexes. Cytotoxicity studies against cancer
425
(HCT-116 p53+/+, HCT-116 p53-/- and HT-29 human colorectal cancer cells) and non-cancer
426
(ARPE-19 retinal epithelium) cells demonstrated that ligand L1 and its associated complexes
427
were more active compared to ligand L2 and its associated complexes. Furthermore, the
428
increased potency is accompanied by a significant increase in selectivity, particularly with
429
regards to HCT-116 cells with defective p53. Whilst potency and selectivity were comparable to
430
cisplatin, the fact that complexes 2-4 retained activity against HCT-116 p53-/- cells marks these
431
compounds as having different properties to cisplatin. Anti-bacterial studies for all the
432
compounds have also been carried out and they were found to be active against all the three
433
bacterial strains.
434
5. Acknowledgment
435
Lincoln Dkhar thanks SAIF-NEHU for spectral analyses and DST-PURSE SCXRD, India for
436
providing Single Crystal X-ray analysis. Lincoln Dkhar also thank the Department of Science
437
and Technology (DST), India for providing financial assistance under the Innovation in Science
438
Pursuit for Inspired Research (INSPIRE) fellowship.
439
6. Supplementary Material
16
440
CCDC 1908852 (2), 1908853 (3), 1908854 (5) and 1908855 (7) contains the supplementary
441
crystallographic data for this paper. These data can be obtained free of charge via
442
www.ccdc.cam.ac.uk/data_request/cif, by e-mailing data_request@ccdc.cam.ac.uk, or by
443
contacting The Cambridge Crystallographic Data Centre, 12, Union Road, Cambridge CB2 1EZ,
444
UK; Fax: +44 1223 336033.
445
7. References
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19
Figure 1: ORTEP generated molecular structure of complexes 2, 4, 5 and 7 with 50% thermal ellipsoid probability. Hydrogen atoms (except on
N2 and O2) are omitted for clarity purpose.
20
1
2
Figure 2: Crystal packing of complex 2 showing intramolecular and supramolecular interaction.
3
4
Figure 3: Crystal packing of complex 4 showing inter and intra molecular hydrogen bonding.
21
5
6
Figure 4: Crystal packing of complex 5 showing inter and intra molecular hydrogen bonding.
7
8
Figure 5: Response of a panel of cancer cells and ARPE-19 non-cancer cells following a
9
continuous exposure (96 hours) to complex 1 to 8, ligands 1 to 2 and cisplatin. Each value
10
represents the mean IC50 ± standard deviation for three independent experiments. Complex 6, 7
11
and 8 have IC50 values >100 µM which was the highest dose tested.
22
12
13
Figure 6: Selectivity ratios for complexes 1 to 5, ligands 1 and 2 and cisplatin. The selectivity
14
ratio is defined as the ratio of IC50 values for ARPE-19 divided by the IC50 for each cancer cell
15
line. Values greater than 1 (as indicated by the broken line) represent compounds that are
16
preferentially active against cancer cells compared to non-cancer ARPE-19 cells. As the
17
selectivity ratio is calculated using the mean IC50 values, no error bars are presented on this
18
figure.
19
20
Figure 7: Figure showing antimicrobial activity (Agar well) of the studied compounds
23
21
Figure 8: Figure showing MIB and MIC of tested compounds
22
23
24
Table 1: IC50 values of pyridyl chalcone (L1 and L2) and complexes 1-8 along with cisplatin
25
against HT-29, HCT-116 p53+/+, HCT-116 p53-/- cancer cell lines and non-cancer cell line
26
ARPE-19. Each value represents the mean ± standard deviation from three independent
27
experiments.
Compounds
28
IC50 (µM)
HT-29
HCT-116 p53+/+
HCT-116 p53-/ARPE-19
Ligand 1
2.10 (+/- 0.19)
4.44 (+/- 0.91)
4.56 (+/- 1.35)
11.21 (+/- 1.82)
Ligand 2
54.18 (+/- 2.19)
43.83 (+/- 5.39)
28.06 (+/- 2.95)
39.39 (+/- 7.05)
Complex 1
15.64 (+/- 0.88)
15.51 (+/- 1.64)
17.56 (+/- 4.04)
15.15 (+/- 4.49)
Complex 2
3.35 (+/- 1.73)
3.44 (+/- 1.17)
2.17 (+/- 0.26)
6.18 (+/- 0.68)
Complex 3
4.95 (+/- 0.86)
4.09 (+/- 1.38)
4.37 (+/- 1.45)
8.89 (+/- 4.18)
Complex 4
4.82 (+/- 0.85)
4.23 (+/- 0.64)
5.17 (+/- 1.13)
7.35 (+/- 3.42)
Complex 5
38.21 (+/- 3.42)
34.60 (+/- 1.73)
39.72 (+/- 3.28)
17.96 (+/- 1.55)
Complex 6
>100
>100
>100
>100
Complex 7
>100
>100
>100
>100
Complex 8
>100
>100
>100
>100
Cisplatin
2.58 (+/- 0.72)
2.78 (+/- 1.4)
7.52 (+/- 0.65)
6.41 (+/- 0.95)
NB - values at 100 = >100 indicates no IC50 at the highest dose tested on 100 µM
29
30
24
31
Table 2: Selectivity ratios of ligands and complexes along with cisplatin in HT-29, HCT-
32
116 p53+/+, HCT-116 p53-/- cancer cell lines.
Compounds
Selectivity Ratio
(HT-29)
Selectivity Ratio
(HCT-116 p53+/+)
Selectivity Ratio
(HCT-116 p53+/+)
Ligand 1
Ligand 2
Complex 1
Complex 2
Complex 3
Complex 4
Complex 5
Cisplatin
5.338
0.727
0.969
1.845
1.796
1.525
0.470
2.484
2.525
0.899
0.977
1.797
2.174
1.738
0.519
2.306
2.458
1.404
0.863
2.848
2.034
1.422
0.452
0.852
33
34
Table 3: Antibacterial activity (Agar well) of tested compounds
S.
No.
Compound
Names
1
Ligand-L1
Zone of inhibition (Diameter in mm)
at conc. 200 μg
S. aureus
E. coli
K. pneumoniae
14 ± 0.22
14 ± 0.18
13 ± 0.10
2
Ligand-L2
15 ± 0.35
15 ± 0.48
14 ± 0.15
3
Complex-1
15 ± 0.26
14 ± 0.16
14 ± 0.32
4
Complex-2
12 ± 0.12
13 ± 0.12
13 ± 0.23
5
Complex-3
14 ± 0.38
14 ± 0.24
14 ± 0.36
6
Complex-4
14 ± 0.26
13 ± 0.16
12 ± 0.08
7
Complex-5
17 ± 0.58
17 ± 0.62
16 ± 0.45
8
Complex-6
15 ± 0.35
16 ± 0.45
14 ± 0.22
9
Complex-7
16 ± 0.56
16 ± 0.68
15 ± 0.35
10
Complex-8
16 ± 0.29
15 ± 0.19
13 ± 0.15
11
Ciprofloxacin
32 ± 0.40
29 ± 0.10
31 ± 0.20
35
S. aureus = Staphylococcus aureus; E. coli = Escherichia coli; K. pneumoniae = Klebsiella
36
pneumoniae, NI: No Inhibition and Data are means (n = 3) ± Standard deviation of three
37
replicates.
38
25
39
Table 4: Antibacterial activity (MIC & MBC) of tested compounds
Stock concentration in 2.0 mg/mL
S.
Compound
S. aureus
E. coli
K. pneumoniae
No.
Names
MIC MBC MIC MBC MIC
MBC
1
Ligand-L1
0.25
0.5
0.25
0.5
0.25
0.5
2
Ligand-L2
0.5
1.0
0.25
0.5
0.5
1.0
3
Complex-1
0.25
0.5
0.25
0.5
0.25
0.5
4
Complex-2
0.5
1.0
0.25
0.5
0.25
0.5
5
Complex-3
0.125
0.25
0.125
0.25
0.125
0.25
6
Complex-4
0.25
0.5
0.125
0.25
0.125
0.25
7
Complex-5
0.25
0.5
0.25
0.5
0.25
0.5
8
Complex-6
0.5
1.0
0.25
0.5
0.25
0.5
9
Complex-7
0.125
0.25
0.125
0.25
0.125
0.25
10
Complex-8
0.25
0.5
0.25
0.5
0.125
0.25
11
Ciprofloxacin
0.062
0.125
0.031 0.062
0.062
0.125
40
S. aureus = Staphylococcus aureus; E. coli = Escherichia coli; K. pneumoniae = Klebsiella
41
pneumoniae.
42
26