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Potential Therapeutic Effects of New Ruthenium (III) Complex with Quercetin: Characterization, Structure, Gene Regulation, and Antitumor and Anti-Inflammatory Studies (RuIII/Q Novel Complex Is a Potent Immunoprotective Agent)
Review Article
Prospects of Synthetic Biology in the
Actualization of Green Chemistry and
Environmental Solutions
.
ABSTRACT
Synthetic biology (SynBio) is an emerging field of endeavor that uses modular and
replaceable biological parts or devices in standard chassis, or whole organisms to generate
intended and programmed outputs that can be quantified and optimized until they meet the
desired efficiency. As a result, SynBio is becoming increasingly popular for addressing
critical global challenges such as the bioremediation of recalcitrant organic and inorganic
pollutants in the environments and the reduction in emission of toxic waste from industrial
processes. Although synthetic chemistry and the chemical industry have greatly enhanced
the quality of life of the human race, they have also caused significant detrimental effects
in terms of pollution, toxic waste emissions, and public health endangerment. SynBio
technology has now found application in the bioremediation of polluted environments and
to actualize previously unfeasible industrial outcomes and green chemistry. This study
elucidates the innovative applications of SynBio concepts in the bioremediation of polluted
environments, the actualization of eco-friendly industrial operations, and the realization of
green chemistry principles. We also explore SynBio-based strategies for minimizing toxic
waste emission and energy consumption, while simultaneously enhancing the production
of value-added industrial products from renewable feedstocks, industrial wastes, and
greenhouse gases. Several ethical and safety concerns and regulatory framework required
to ensure the responsible application of SynBio technology were also reviewed. By
unearthing the propitious potential of SynBio in biotechnology, sustainable development,
and green chemistry, this study aims to afford insights into the future directions of SynBio
technology and its potential impact on various sectors, from industry to environment.
Keywords: Synthetic biology; Green chemistry; Bioremediation; Sustainable development
1.0 INTRODUCTION
SynBiology or Synthetic biology (SynBio) is a discipline of biology that employs engineering
ideas to design and construct new biological systems with predefined functions [1]. Essentially,
SynBio encompasses the design of novel approaches for programming predictable cellular
modalities and depends immensely on the growing wealth of knowledge and expanding
research efforts in genomics, computer sciences, biomedical and chemical engineering, and
even mathematics. It entails using genetic engineering, computer modeling, and other
methodologies to create biological components and systems for a variety of applications,
including industrial microbial processes, environmental microbiology, and green chemistry [2].
System biology is founded on genetic engineering and has been utilized for decades to edit
and manipulate the genetic materials of living organisms. Conversely, toggling a step further,
SynBio technology alongside modifying existing systems seeks to construct novel and more
efficient cellular systems from scratch that do not exist in nature. In connection with this,
.
SynBio is viewed as a "bottom-up" strategy of cell engineering that entails the assemblage of
smaller functional parts to build large cellular systems that can produce intended outcomes
[1].
Globally, large portions of land and water resources are already contaminated due to industrial
activities, such as mineral mining, polymer synthesis, transportation, and agriculture [3, 4]. As
a way to curb this menace, innovative methods of minimizing waste emission, handling tainted
waste, and restoring damaged areas are now developed through the application of synthetic
biology [2].
Furthermore, before concerns about the environment, human health, and safety came to
prominence, the manufacturing and distribution of chemicals had a relatively easy economy
[2]. In the past, feedstock expenditures, energy requirements, and product marketability were
among the main economic issues at play [5]. Now, however, expenditures have to include
expenses related to waste disposal, end-of-pipe waste treatment, liability, and regulatory
compliance [6]. Auspiciously, green chemistry is proposed to eliminate or significantly reduce
the additional costs associated with meeting the environmental and safety requirements of
conventional chemical synthesis by doing away with or drastically reducing the use of toxic or
hazardous feedstocks and catalysts as well as abrogating the production of dangerous
intermediates and byproducts [7]. Consequently, the tenets of green chemistry are being
adopted and propagated in various life domains, including medicines, material sciences,
agriculture, biotechnology, and environmental sciences [8]. Also, biodegradable products
harnessed from renewable feedstock such as lignocellulosic waste, and agricultural and
industrial bioproducts are now used to substitute petroleum-based products, hence mitigating
their environmental implications. In the same vein, chemical reactions in the production chain
are being controlled and monitored by smart devices, such as biosensors, microfluidic chips,
and nanomaterials [9]. In addition, industrial processes continue to adopt more eco-friendly
solvents and ionic liquids, including supercritical fluids, deep eutectic solvents, or switchable
solvents for the dissolution or extraction of materials [10]. The sustainable synthesis and utility
of novel enzymes to catalyze reactions that would otherwise require hazardous chemicals and
extreme conditions is one striking innovation afforded by SynBio technology [11].
The application of SynBio-based technology in industrial operations is proposed to hold
promise in curbing environmental pollution [12, 13]. For instance, only recently have bacteria
designed using SynBio techniques been deployed to tackle dangerous and recalcitrant heavy
metals like mercury and arsenic that elicit deleterious immune reactions [13]. Nowadays,
engineered microorganisms that can degrade resistant environmental toxins have found
applications in various product and manufacturing sectors. We can now engineer organisms
capable of degrading everyday wastes, such as plastics, pharmaceuticals, hydrocarbons,
pesticides, and personal care products that predominate in water bodies, air, and polluted
soils [14]. In the same vein, SynBio-enhanced biosensors have now emerged and are been
deployed to monitor and detect the presence of hazardous substances in the environment;
keeping their toxic effects on humans and the environment in check [12]. SynBio technology
has found massive utility in the management of industrial sites and the restoration of polluted
areas [15]. Interestingly, several environmental merits and assurance have been realized by
the adoption of SynBio in addressing certain quintessential global concerns, and it is projected
to create a sustainable future (Figure 1). However, some key ethical considerations, safety
protocols, and regulatory frameworks must be instituted and constantly reviewed to ensure
the responsible application of SynBio technology. The present study reviews the prospects of
SynBio technology in the actualization of green chemistry and environmental solutions.
Figure. 1: SynBio technology; the new directions for sustainable future
1.1 Challenges and Innovations in Environmental Microbiology
Environmental microbiology investigates the dynamic interactions that exist between
microorganisms and their ecological niche and utilizes available data to solve several
environmental problems. In recent times, as the world currently witnesses the impact of the
evolution of novel and more aggressive forms of infectious agents in the environment, new
recalcitrant compounds have also been discovered in surface and ground waters that
previously served as our potable water sources [12]. Perhaps, this could be due to the
increasing strains placed on water resources, as society grows. For example, groundwater is
currently being pumped out faster than it can replenish itself in some regions of the United
States [16]. With rising waste discharges containing chemical and biological contaminants
finding their way into our water resources, it is evident that environmental microbiologists face
significant challenges in this regard. These challenges also arise in polluted soils. Land
resources are becoming increasingly scarce as the world population grows, and settlements
are encroaching on contaminated places such as agricultural fields with years of pesticide use,
landfills, and mine tailings sites. The use of molecular genetics and biotechnology tools has
considerably improved these subjects in both circumstances. With the worldwide population
rise, the development and assessment of new ways of detecting and eradicating germs and
pathogens in food and water supply, as well as the air that humans breathe, has become vital
to public health. Additionally, pathogens and pollutants detection capacity of modern-day
technologies have immensely improved and expanded. Sequel to this, the use of risk
assessment to determine the need for control where it is most effective, as well as community
education to lessen the dangers associated with living near polluted sites, is becoming
increasingly worthwhile. However, despite the horizon and advancement of research efforts,
microbial communities remain poorly understood and challenges in replicating complex
ecosystems remain an impending factor [17]. Nevertheless, the application of SynBio
techniques in environmental microbiology is laying the foundations for more precise genetic
engineering, allowing for the introduction of artificial or optimized metabolic pathways into
certain microbial strains aiming at bioremediation [2]. Possibly, the addition of SynBio-based
functions to microbiological organisms is projected to enhance bioremediation, nutrient
recycling, and ecosystem restoration as discussed later on.
2.0 FABRICS OF GREEN CHEMISTRY
Green chemistry entails the integration of chemical innovations, expertise, and practicality to
reduce or eliminate the use of harmful substances in the design, production, and use of
chemical entities along the production chain. The concept of green chemistry is centered on
resource conservation, pollution reduction, health, safety, and sustainable environment
promotion [18]. As an emerging and multifaceted concept, green chemistry accentuates safe
and efficient chemical synthesis, the deployment of alternative solvents, and biocatalysts, and
the realization of clean and renewable energy. Green chemistry is targeted at eliminating the
detrimental effects of hazardous industrial products or by-products on the environment, and
curbing the recently increased modalities and mortality accompanying industrialization [19].
Green chemistry lessens the harmful environmental effects of chemical production processes,
contributing to the development of a more sustainable industrial landscape [20]. The 12
principles of green chemistry (Figure 2) can also be successfully applied to organic synthesis,
where hazardous solvents are typically used: maximum atom economy (avoidance of wastes
and by-products, especially when using solvent-less techniques, i.e. dry media), safer and
innocuous chemical synthesis routes void of harmful chemical substances, use of renewable
precursors (biomass replacing fossil fuels), small amounts of catalysts (innocuous and
preferably solids to be renewable), safer chemicals and solvents (water, ionic liquids) and
biodegradable materials. Ionic liquids have attracted considerable attention as alternative
reaction media for a wide range of chemical transformations, because of their low vapor
pressure, good solvating characteristics, considerable thermal stability, and easily adjustable
physical (e.g. melting point, vapor pressure, or viscosity) and chemical properties (e.g.
polarities, basicity, and acidity, basicity). By adhering to green chemistry principles, it is now
possible to implement energy-efficient processes that minimize waste production, promote
matter and energy economy, employ safer solvents and renewable chemicals, produce less
hazardous materials, and execute smart catalysis with fewer byproducts or derivatives under
biodegradable process design [21].
Figure 2: The 12 principles of green chemistry
2.1 Renewable Resources
Chemistry is required for the creation of most products utilized in daily life, such as fuels,
transportation devices, construction materials, food products, pharmaceuticals, personal care
products, and communication accessories. Given the breadth of this sector and its expansion
requirements to ensure development and technological progress that can satisfy the demands
of the growing global population, the time has come for a new chemical era in which the
environmental impact of chemical products is minimized in terms of hazards, carbon footprint,
life cycle, and resource sustainability. Despite recent reports of global warming and depletion
of fossil fuel reserves, international efforts to promote the production of carbon-neutral end
products and reduce CO2 emissions following the Kyoto Protocol have not been fully realized.
Scientific investigations continue to focus on identifying and developing innovative solutions
for the substitution of petroleum-based resources with renewable alternatives [22]. The use of
biomass as readily available and internationally scalable feedstock has come into the limelight
for the chemical industry and is upheld as a promising alternative to the usage of carbon
resources. Green chemistry promotes the utility of renewable feedstock utility, such as
biomass and plant-based resources, as opposed to non-renewable resources, to produce
sustainable products [22]. Biomass utilization to produce energy, chemicals, and industrial
commodities is a significant step toward the realization of sustainable product development.
Biomass includes all macromolecular feedstocks derived from agricultural proceeds, forestry
products, and their residues. The use of renewable feedstocks, particularly biomass, is a
critical component of green chemistry. Using biomass for chemical processes cannot be
regarded as an end in itself until all other green chemistry principles are meticulously applied.
Hence, the principles of green chemistry are required to guide the entire biomass utility
process. The core principles of green chemistry, which entail the efficiency of reactions, atom
economy, moderated resource consumption, waste prevention, and increased safety of
manufacturing processes and end products, all apply at all stages of biomass utility, from
biomass generation and conversion to ultimate utilization of biobased products.
2.2 Atom Economy
Atom Economy entails the design of chemical reactions that consumes all starting materials
and emits the least amount of toxic waste. The primary objective of atom economy is to
optimize the incorporation of starting ingredients into the ultimate result of any given industrial
process. If maximum integration cannot be accomplished, then the levels of side products
should preferably be minute and ecologically innocuous. Conversely, the reaction yield is
solely concerned with the amount of the desired product that is recovered compared to the
theoretical amount of the product. Along with the desired output, the atom economy considers
all consumed reagents and undesired byproducts. Substitutions and eliminations, for example,
account for the majority of uneconomical classical reactions in which intrinsic wastes are
unavoidable. There is a fundamental difference between how a reaction yield and an atom
economy yield are calculated [23].
2.3 Biocatalysis
Green chemistry emphasizes the deployment of biological catalysts to speed up chemical
reactions to greatly reduce the amount of energy and resources consumed during the
production of industrial products. In general, a bio-based economy entails multidisciplinary
research efforts at the interface of biotechnology and chemical engineering, with an emphasis
on the creation of environment-friendly chemo- and bio-catalytic modalities for the conversion
of waste biomass into biochemicals, biofuels, and other bio-based products. In this regard,
biocatalysis has a lot to offer. They are biodegradable and derived from renewable biomass.
In addition, biocatalyst-based production processes generate less waste and use less energy
than conventional ones because they operate in milder conditions [22]. Biocatalysis is a
sustainable and green technology based on the ideas and measurements of sustainable
development and green chemistry.
The tremendous break-even made in molecular biology and biotechnology over the last 20
years is primarily responsible for this progress [23]. Through the use of protein engineering, it
is now possible to create completely new biocatalytic reactions that were not previously known
to exist in nature as well as to optimize already existing enzymes. Enzymatic transformations
that meet predetermined parameters are now developed with great ease, leading to inherently
sustainable processes [24]. Consequently, this approach has been deployed effectively in the
industrial production of active pharmaceutical compounds and other value-added industrial
products [25]. Other biocatalysis engineering techniques, such as medium, substrate, and
reactor engineering, are now applied in addition to protein engineering to increase the
productivity, economy, and sustainability of biocatalytic reactions [26]. Moreover, enzyme
stability is enhanced even more through immobilization, allowing for repeated use and
improved performance as well as commercial viability. As a result, biocatalysis is being used
extensively in the manufacturing of several valuable industrial chemical commodities,
including active pharmaceutical ingredients [27]. It has also been projected that the developing
biobased economy associated with biocatalysis will further encourage its wider adoption in the
future [28].
2.4 Designs for Degradation
The concept of design for degradation is targeted at creating chemical products that are easily
degraded after use and pose no potential threat to the ecosystem [12]. In the realm of green
chemistry, chemicals ought to be made in such a way that, after serving their purpose, they
should be able to break down into innocuous byproducts and disappear from the environment.
Unintentional hazards associated with the manufacture and use of chemicals pose terrible
effects on human health and induce deplorable environmental damage. The lack of integrated
thinking during the production and distribution of chemicals has frequently resulted in the
manifestation of these adverse impacts on the environment [29]. Traditional industrial
processes have not been able to adequately account for the pre- and post-market conditions
of industrial products. Too many negative consequences are found after products and
chemicals are dispersed throughout our environment, despite the robust testing systems [30].
In solving these problems, the first step is to ascertain the "molecular itinerary" of a product,
which entails factoring and forecasting who, what, where, when, and why of an industrial
product along its trajectory from production to degradation. This can be likened to a travel
agency offering a comprehensive schedule for an extended, multi-city journey. When all the
points on the itinerary tract are well considered, everyone is content, healthy, and makes it
home safely, with unfavorable events either avoided or significantly reduced. These efforts are
the core objectives of green chemistry [31].
2.5 Safer Solvents
Green chemistry promotes the use of non-flammable and non-toxic solvents that pose the
least detrimental effect on the environment [21]. Solvents are widely understood to pose
severe hazards to the environment. Also, one of the primary goals of green chemistry is to
reduce solvent consumption. Furthermore, selecting the appropriate solvent can considerably
improve the sustainability of a chemical production process. The use of so-called green
solvents, such as supercritical fluids and ionic liquids, has also been extensively researched
[32]. Notably, twelve (12) requirements for the conformity of green solvent have been
proposed, viz; availability, price, recyclability, grade, synthesis, toxicity, biodegradability,
performance, stability, flammability, storage, and renewability [33]. Nonetheless, the majority
of solvent technologies that lead to increased sustainability are derived from the use of wellestablished and workable solvents. It is also clear that increases in business performance are
necessary for the effective adoption of environmentally friendly procedures. Process chemists
and engineers must work closely together to select the right solvents, use the fewest solvent
classes possible in each step, steer clear of azeotropes and emulsions, optimize reflux or
near-reflux conditions for high-temperature extended reactions, and, lastly, maximize solvent
recovery and distillation in the process [34]. Similarly, close cooperation between chemical
engineers and process chemists is necessary, as the latter are typically more skilled in
azeotrope production, distillation, and process optimization [35]. In addition, several risk
control techniques can be employed along the various chemical steps involved in the
fabrication process to reduce environmental risks. The use of different precursor molecules,
catalysts, solvents, and reagents, as well as alternating target product production, real-time
process monitoring, and short-duration synthesis has aided the realization of green chemistry
in industrial operations.
3.0 APPLICATION OF SYNBIO IN ENVIRONMENTAL MICROBIOLOGY
SynBio has been applied in environmental microbiology operations to produce biotreated
systems capable of mitigating the levels of toxic recalcitrant organic pollutants, heavy metals,
and other environmental contaminants in the environment. For example, breakthroughs in
SynBio have allowed the development of engineered bacteria that can consume recalcitrant
non-biodegradable waste such as plastic waste [36]. Synthetic microbes with optimized
efficiency in sensing, degrading, and reporting toxic pollutants in the environment are now
been designed. Also, the development of SynBio-based biosensors with customized abilities
is now not only used as herbicides and pesticides but also applied to sites containing heavy
metals or other environmental contaminants that need remediation [37]. SynBio enjoys
enormous industrial applications for the implementation of the concept of green chemistry.
The application of SynBio principles has enabled the fabrication of enzymatic modalities for
the realization of renewable and environmental-friendly bio-products such as bioplastics and
biofuels, renewing hopes for the actualization of clean energy and sustainable environment at
the heart of industrialization [38, 39].
3.1 Merits of SynBio in Environmental Microbiology
Recently, SynBio has shown great potential in re-engineering microorganisms with enhanced
functionalities for performing more efficient biodegradation and bioremediation processes,
resulting in more sustainable environments [40]. SynBio technology has improved the
degradation of resistant compounds in polluted soil by optimizing the biodegradation
capabilities of bacteria via genome manipulation [12]. Presently, microbial consortiums can be
modified using SynBio-based technologies for improved biodegradation. A microbial
consortium refers to a group of microorganisms working together to undertake a single
complex metabolic activity. The design of synthetic microbial consortia with improved
biodegradation and bioremediation outcomes is another huge accomplishment brought on by
SynBio technology [41]. These microbial consortia are capable of degrading a broad range of
pollutants in wastewater and other industrial effluents [40]. The metabolic functions of these
synthetic microbes are engineered to exhibit excellent degrading abilities on certain
environmental pollutants [14].
Environmental monitoring and biosensoring have also seen massive improvement via the
application of SynBio technology. In the last few years, SynBio-based engineered
microorganisms have been introduced into the environment to screen and detect harmful
compounds or adverse environmental conditions and today is seen as a powerful
environmental monitoring and assessment tool [40]. Sequel to this, researchers now design
microbial agents capable of detecting certain pollutants occurring in the environment. These
microorganisms produce fluorescent proteins in response to target toxic substances and thus
monitor the concentrations of these noxious chemicals in the environment (whether air, soil,
or water) within certain limits [42].
3.2. SynBio-Based Bioremediation
Synthetic biology has numerous potentials and is being put to good use more and more in
industrial microbial operations, particularly in bioremediation [12]. The deployment of
engineered bacteria to degrade hazardous materials in the environment and restore the
ecosystem is thought to be an efficient approach to bioremediation. These bioremediation
efforts have been hugely successful via SynBio-based development of microbial entities
capable of digesting environmental recalcitrant pollutants, including polycyclic aromatic
hydrocarbons (PAHs), and Per- and polyfluoroalkyl substances (PFAS) as shown in Figure 3
[43, 44, 45]. Currently, researchers are now able to construct key microbial biochemical
pathways that effectively target the degradation of certain waste or pollutants, which fuels the
pathways as substrates, and in some cases results in the synthesis of value-added products
[12]. Also, toxic and environmental recalcitrant heavy metals, such as cadmium, mercury, lead,
arsenic, and copper, which are capable of inflicting devastating adverse effects on human
health as well as on the environment are now monitored and sequestered from the
environment via SynBio techniques. In this regard, certain microorganisms have been
engineered as biosensors capable of selectively detecting heavy metals in contaminated
areas more rapidly and efficiently, as well as binding and removing these noxious compounds
from the affected area [46].
Figure 3: Per-And Polyfluoroalkyl Substances from the Environment [45].
Conventional bioremediation methods are impeded by several drawbacks. They require more
time, remove or assimilate fewer pollutants, disrupt natural ecosystems by covering more land
for extended periods, and cause unpleasant odors in the surrounding area [47, 2]. For the
greatest outcomes, scientists are therefore keen to find novel bioremediation strategies [48].
Application of synthetic biology has been shown to enhance bioremediation processes (Figure
4). In this regard, [49] described synthetic biology as a boosting strategy in bioremediation. It
has been demonstrated that this approach captures the metabolic and catabolic complexity
while utilizing the synthetic capacity of the microbial population [50]. Basically, information
required to develop synthetic microbial models for bioremediation are obtained by mining
genes from appropriate databases [51]. Computer logic can then be used to determine how
microbial cells interact with compounds that are resistant to their effects [52]. Combining these
strategies can help develop microbes into novel and fascinating biological forms utilizing their
innate metabolic ability [47].
Figure 4: SynBio-based strategies for improved bioremediation
Generally, the identification and removal of hazardous and recalcitrant heavy metals in the
environment has been a key challenge to environmental scientists and this continues to pose
a threat and has prompted the need to propose novel approaches to deal with this menace
[53]. In a bid to address these problems, a study deployed SynBio-based genetic circuits and
reporter functionalities to ensure higher sensitivity, greater effectiveness with various types of
contaminated materials, and cost-efficiency. A detection range of 100 nM-1 μM and 100 nM10 μM for P. fluorescens and E. coli, respectively was recorded. Another study by [54] used a
pmerRBPmerlux genetic circuit to detect mercury in soil samples, in which the rate of release
of mercury into the water from the soil was speed-up by using a rhamnolipid biosurfactant and
a bioluminescent immobilized E. coli MC106 cell, which contained the genetic circuit.
Progressively, [55] developed a cell-free system using an evolved mutant of ArsR that enabled
efficient, sensitive detection of Arsenic with a limit of 3.65 μg/L which is within the limit given
by WHO. In a study carried out by [56] to establish the most effective biosensor combination,
thirty whole-cell cadmium biosensors were constructed using WCB KT-5-R with P. putida
KT2440 as the host, and a gene circuit comprising mCherry and CadR. To boost the efficiency,
a positive feedback amplification module and a larger reporter gene dose were introduced.
From their result, whole-cell biosensors (WCBs) with the T7RNAP amplification module,
p2T7RNAPmut-68, demonstrated great specificity and enhanced cadmium tolerance with a
detection limit of 0.01 [57] engineered E. coli Rosetta that was able to express ribB and OprF
with promoter PcusC and Pt7, respectively that could produce porin and detect Cu2+ to
generate riboflavin. This modified strain's cell membrane permeability was increased, and the
concentration of riboflavin generated (1.45-3.56 M) was correlated positively with Cu2+ levels
(0-0.5 mM). Furthermore, increased production of riboflavin was observed upon activation of
PcusC in the presence of Cu2+ in water. This strain was then employed in microbial fuel cell
(MFC)-based biosensors. Resultantly, the liberation of riboflavin into the extracellular matrix
by the OprF-encoded porin enhanced MFC voltage generation. A linear correlation was also
recorded between Cu2+ at concentrations ranges of 0.1-0.5 mM and MFC biosensor voltage
generation (248-407 mV), indicative of the suitability of this system in Cu2+ monitoring in
drinking water [57].
3.3 Biosensors
Biosensors are analytical tools that translate electrical signals from a biological reaction [58].
There are several varieties of biosensors, such as enzyme-based, thermal, tissue-based,
DNA, piezoelectric, immunosensors, and immunosensors. Biosensors are essentially required
to have high specificity, be reusable, and be unaffected by physical conditions like pH and
temperature [59]. Essentially, transcription-factor-based (TFB), RNA-based (RNAB), and twocomponent biosensors (TCBs) are examples of genetically encoded biosensors [60, 61, 62].
The TCB is composed of a transmembrane sensor histidine kinase (SK), which measures
extracellular levels of a given metabolite, alongside an SK cognate cytoplasmic response
regulator (RR), and an RR cognate promoter [63]. Specific metabolite concentrations within
cells are detected by TFBs and RNABs [64]. Therefore, the variations in the spatial distribution
of the metabolites that are identified dictate how these biosensors should be used.
3.3.1 Biosensor Fabrication
The biosensor output and performance are optimized by using different engineering strategies
to fine-tune the biosensor components (promoters, RBS, and operator) [65]. Additionally,
biosensor specificity are being modified using RNA and protein domain swapping strategies
[66]. The designed biosensors usually respond to extracellular or intracellular level of a single
specific compound by generating visible signals, such as bioluminescence or cell growth [67].
Hence, coupled with the desired biosensors and the diverse mutagenesis strategies, the
intended genotype can be tested via high-throughput screening of the measurable phenotype.
By doing this, TCBs can detect changes in the extracellular concentration of a target chemical
substance and can be used in directed evolution [68]. Directed evolution is a valuable tools
used for manipulating the structure and functions of protein by exploring natural evolution, but
on an abridged duration. It allows for rapid selection of variants of biomolecules with more
suitable properties required for a particular application [69, 70]. Intracellular substances can
be detected by TFBs and RNABs. Notably, the spatial distribution of the substances identified
should determine which biosensor type is applied [71]. However, currently, the biggest
constraint to this technique is to precisely and effectively construct these biosensors [59]. The
primary source of time and labor expenditures associated with trial-and-error methods for
producing the intended biosensors is the optimization of TF, SK, RR, and riboswitch
expression levels and structures [72]. To address this issue, deep learning, and machine
learning-based artificial intelligence technologies are starting to be included in the biosensor
design process, greatly enhancing the accuracy and productivity of the final product [73]. [59]
opined that because biosensor design does not yet have a unified large data-collecting method
for artificial intelligence model training, it is premature to use artificial intelligence in biosensor
design.
3.3.2 Coupling Biosensors with Omics Technologies
Furthermore, it has been reported that biosensors could function more efficiently when
combined with high-throughput omics technologies, ultimately affording a systems-level view
of the organisms, macromolecules, and metabolites of study [74]. Data obtained from -omics
studies could be leveraged to restore microbial activities and ecological functions, as well as
discover molecular switches in microbial populations, such as genes linked to greenhouse gas
production. The deployment of -omics technologies in microbial population studies has been
very operative in establishing ecological hypotheses. It is insufficient to solely provide allinclusive information regarding certain cause-and-effect conditions [75]. On the other hand, a
reductionist approach that investigates the distinct impacts of individual microbial cells and
their liberated biomolecules on environmental outcomes could be achieved using biosensors
[76]. Biosensors can generate additional temporal and spatial clue on the activities of certain
members of a given microbial community, the environmental determinants that stimulate
cellular behaviors, and the impacts of the local environment on the bioavailability of
biomolecule [77].
3.3.3 SynBio-Enhanced Biosensors Applications
SynBio technology has enabled the fabrication of improved biosensors used in environmental
monitoring, which in turn has facilitated the production of clean water, void of heavy metal
toxicity. A recent submission documented the discovery of a genetic circuit in bacteria that, in
response to traces of heavy metal exposure (such as arsenic), produced chromophoric
proteins. Investigators are now able to create biological systems that can react to and identify
dangerous ubiquitous substances that are difficult to control, such as pesticides and
herbicides, thanks to SynBio concepts [78]. Generally, advances in biosensor development
have had significant impacts on the implementation of environmental monitoring, clean
energy, medical diagnostics, improved agriculture, and food safety, in recent years. Recently,
investigators and medical associations have switched focus toward using low-cost biosensors
to test food and water pollutants, manage human biological processes, determine precise
health diagnoses, and other applications [79]. Researchers and medical practitioners require
safe and cost-effective methods of conducting research, guaranteeing public safety, and
providing personalized health care to patients. Biosensors application is one of such approach
that can be simply implemented [80]. Biomedical diagnostic research is becoming increasingly
important in the modern medical profession. The applications of biosensors include infectious
disease screening and early diagnosis, chronic illness therapy, health management, and wellbeing monitoring. Improved biosensor technological capabilities enable disease detection and
tracking of the body's reaction to therapy [81].
Basically, a biosensor comprises three modules, viz; the sensitive biological element, which
attaches to the target molecule, the transducer, which converts the interaction into a
measurable signal; and the signal processor, which presents the result in an easy-to-read
manner. Usually, DNA circuit diagrams, which show details on the genes in each module, the
regulation of gene expression, and the interactions between module components, are used to
illustrate biosensors. Biosensor input and output relationships usually have a sigmoidal form.
A sensor's dynamic range is the difference between its maximum input before saturation and
the threshold environmental input required for activation, also known as the limit of detection.
The recent influx of novel synthetic biology modules has significantly expanded the spectrum
of detectable inputs, the intricacy and functionalities of processing modules, and the range of
conditions where outputs can be identified. Thus, there is an opportunity to develop biosensors
that address fundamental questions in fields such as environmental engineering,
biogeochemistry, geobiology, and ecosystem ecology. Although a few early tools were utilized
in environmental samples [82,83], these resources have not been widely accessible to the
Earth and environmental science communities.
Furthermore, advanced biosensors provide an opportunity to investigate unresolved
environmental research inquiries. This includes detecting biogenic substances at micro
concentrations, observing organisms interactions, monitoring how environmental cues
influences cell-cell signaling, quantifying variations in horizontal gene transfer (HGT) in the
changing environments, and recording information in cells while preserving spatial and
temporal heterogeneity in the natural environment. Biosensors, which continuously capture
information at the micron scale, offer unique opportunities for studying ecosystems from a
microbial perspective. Moreover, the evolving innovations of SynBio technology have pulled
through the development of an avalanche of improved biosensors. These encompass the
creation of more sophisticated genetic circuits and approaches for fine-tuning circuit
components for environmental applications. SynBio principles have made feasible the
development of in-vitro and in-vivo biosensors [84]. Originally, biosensors were developed by
programming easily modifiable and rapidly growing bacteria strains. However, while these
bacteria laid the foundation of biosensor creations, the recent growing initiative to broaden the
horizon of reliable and programmable microbial strains via SynBio concepts remains the
mainstay of modern biotechnology [85]. Biosensors derived from environmental microbes
could prove valuable in reporting new types of information within more realistic settings. For
instance, enabling biosensors to report on their own experiences in situ within environmental
matrices. Recent innovations in cell-free biosensors have facilitated the creation of fast and
easily deployable sensors capable of monitoring macroscale spatial and temporal
heterogeneity at field sites. This is analogous to point-of-care diagnostics commonly used in
biomedical applications.
3.4 Advances of SynBio in Harnessing Environmental Sustainability
Despite the significant improvement in the standard of living synthetic chemistry and the
chemical industry have offered humans, they have also posed tremendous negative impacts
on human health and the environment in terms of toxic waste, and pollution, and represent
serious threats to public health [30]. The growing awareness and rising need for a clean
environment geared in part by global warming and environmental sustainability have driven
the emerging concept of green chemistry, which is the act of designing synthetic processes
and products in ways that generate the least toxic compounds as well as reduces the
requirements of energy and natural resources [86] nature has contributed immensely to the
actualization of this goal. Several years of evolution have resulted in an extremely diversified
assortment of natural products and their associated enzymatic processes [87]. Synbiologists
are taking advantage of the wealth of possibilities nature affords to design chemicals and
synthetic processes in more renewable forms to mitigate pollution at all phases of production,
which is the mainstay of the goal of green chemistry [88]. There are many advantages that
biosynthetic technologies have over industrial chemical synthesis. Naturally, enzymes
catalyze their specific reactions most efficiently and frequently under certain optimized
conditions, including normal temperatures and pressures, neutral pH, and aqueous solutions,
and allow for the simultaneous operation of a variety of enzymes within the same medium,
such as organelles or cells [89]. This concept has enhanced the creation of multiple-step
synthetic pathways for the in vivo production of complex compounds from less expensive and
renewable feedstock (Figure 5).
Figure 5: A schematic of the possible contribution of SynBio to green chemistry.
Engineered organisms can produce a wide range of key compounds from renewable
resources, waste, and potentially harmful substances such as carbon dioxide.
3.5 Potential Impacts of SynBio on the Environment and Society
The possible impacts of SynBio on the human community and its environment are broad and
complicated. Although SynBio renders clear-cut potential to address several sustainable
development goals as well as provide solutions to deal with environmental and societal
bottlenecks, it also raises crucial social and ethical concerns [90]. The design and deployment
of synthetic microbes or biomacromolecules into the environment can result in alteration in the
normal composition of ecosystems which could ultimately be detrimental to human health. The
high possibility of spreading genetically modified microbes into natural populations, which
could sprout unintended repercussions poses great concerns among policymakers [91]. There
are also several social and ethical concerns associated with SynBio as pertain to the main
beneficiaries of the technology and risk bearers. Therefore, it is necessary to consider a caseby-case basis to achieve a balanced compensation for beneficial attributes of SynBio
technologies as well as considering possible detrimental outcomes for vulnerable groups [92].
Hence, it would be appropriate to design and implement regulatory frameworks regarding the
application of SynBio technologies [92].
3.6 Safety Concerns and Ethical Issues
Among the drawbacks of SynBio are its safety profile and that of any of its end-products. The
major safety concerns focus on the possibility of accidental escape into nature by these
artificial microbes, which could cause harm to human health or have negative environmental
impacts [93]. A case of reference is the recent COVID-19 outbreak that claimed many lives
[94]. Therefore, learning from experience with such heinous threats, many ethical issues and
safety concerns have been raised about the application of SynBio technologies. For
policymakers, the danger that artificial cells or their products will be abused and weaponized,
in addition to the fear that artificial pathogens could mutate and become invasive or harmful,
then spawn diseases affecting public health or even distorting ecosystems are the major
hindrances to the full adoption of this innovation [95]. Therefore, many experts have come up
with the view that safety measures and standards governing artificial microorganisms should
be continuously reviewed at each stage of their progress to ensure they are not harmfully
deployed. Moreover, the fear that some of these synthetic organisms might cause unexpected
threats to human health or the environment in the future has also caused many researchers'
ethical concerns [96]. In fact, the ethical considerations and moral implications of creating life
in the lab are also worrisome [97]. As a result, several regulatory frameworks have already
been developed with the aid of which it will be possible to monitor global conformity with
respect for ethical values when designing and using synthetic cells [97, 98].
4.0 CONCLUSION
Since its inception in the 1970s, pioneered by the early developments in genetic engineering,
SynBio has since advanced immensely, with the development of newer and more
sophisticated techniques and tools for editing microbial genomes. SynBio has shown
enormous prospects in actualizing several sustainable development goals, such as the
generation of sustainable food products and renewable energy supply. SynBio technologies
are increasingly deployed to produce novel and sustainable commodities as alternatives to
traditional environmentally detrimental products. The actualization of green chemistry and
bioremediation of contaminated environments has been greatly enhanced with the
introduction of SynBio technology. However, the technology is faced with several ethical and
regulatory bottlenecks, which have chiefly limited its applications and implementations.
Nevertheless, focusing on the prospects of this technology, such as the deployment of artificial
intelligence and non-genetic biomolecular entities to optimize and design synthetic systems
comes with many expectations. SynBio as an emerging and electrifying field with tremendous
potential to revolutionize the chemical industry and the environment proffering solutions to the
insatiable societal and environmental issues.
CONSENT (WHEREVER APPLICABLE)
Not applicable
ETHICAL APPROVAL (WHEREVER APPLICABLE)
Not applicable.
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