← Back
Rationally Designed Long-Wavelength Absorbing Ru(II) Polypyridyl Complexes as Photosensitizers for Photodynamic Therapy.
doi.org/10.26434/chemrxiv.11336669.v1
Rationally Designed Long-Wavelength Absorbing Ru(II) Polypyridyl
Complexes as Photosensitizers for Photodynamic Therapy
Johannes Karges, Franz Heinemann, Marta Jakubaszek, Federica Maschietto, Chloé Subecz, Mazzarine
Dotou, Olivier Blacque, Mickaël Tharaud, Bruno Goud, Emilio Vinuelas Zahinos, Bernhard Spingler, Ilaria
Ciofini, Gilles Gasser
Submitted date: 10/12/2019 • Posted date: 17/12/2019
Licence: CC BY-NC-ND 4.0
Citation information: Karges, Johannes; Heinemann, Franz; Jakubaszek, Marta; Maschietto, Federica;
Subecz, Chloé; Dotou, Mazzarine; et al. (2019): Rationally Designed Long-Wavelength Absorbing Ru(II)
Polypyridyl Complexes as Photosensitizers for Photodynamic Therapy. ChemRxiv. Preprint.
https://doi.org/10.26434/chemrxiv.11336669.v1
The utilization of Photodynamic Therapy (PDT) for the treatment of various types of cancer has gained
increasing attention over the last decades. Despite the clinical success of approved photosensitizers (PSs),
their application is limited due to poor water solubility, aggregation, photodegradation, and slow clearance
from the body. To overcome these drawbacks, research efforts are devoted towards the development of metal
complexes and especially Ru(II) polypyridine complexes based on their attractive photophysical and biological
properties. Despite the recent research developments, the vast majority of complexes utilize blue or UV-A light
to obtain a PDT effect, limiting the penetration depth inside the tissue and therefore, the possibility to treat
deep-seated or large tumors. To circumvent these drawbacks, we present the first example of the DFT guided
search for efficient PDT PSs with a substantial spectral red shift towards the biological spectral window.
Thanks to this design, we have unveiled a Ru(II) polypyridine complex, which causes phototoxicity in the
very-low micromolar-to-nanomolar range at clinically relevant 595 nm, in monolayer cells as well as in 3D
multicellular tumor spheroids.
File list (2)
Article_ChemRxiv.pdf (606.52 KiB)
view on ChemRxiv
download file
SI_ChemRxiv.pdf (5.38 MiB)
view on ChemRxiv
download file
Rationally Designed Long-Wavelength Absorbing
Ru(II) Polypyridyl Complexes as Photosensitizers for
Photodynamic Therapy
Johannes Karges,† Franz Heinemann,†,‡ Marta Jakubaszek,†,¶ Federica Maschietto,§ Chloé
Subecz,† Mazzarine Dotou,† Olivier Blacque,‡ Mickaël Tharaud,$ Bruno Goud,¶ Emilio
Viñuelas Zahínos,⊥ Bernhard Spingler,‡,* Ilaria Ciofini,§,* and Gilles Gasser†,*
† Chimie ParisTech, PSL University, CNRS, Institute of Chemistry for Life and Health
Sciences, Laboratory for Inorganic Chemical Biology, 75005 Paris, France.
‡
Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057, Zurich,
Switzerland.
¶
Institut Curie, PSL University, CNRS UMR 144, 75005 Paris, France.
§
Chimie ParisTech, PSL University, CNRS, Institute of Chemistry for Life and Health
Sciences, Theoretical Chemistry and Modelling, 75005 Paris, France.
$
Université de Paris, Institut de physique du globe de Paris, CNRS, F-75005 Paris, France.
⊥
Departamento de Química Orgánica e Inorgánica, Facultad de Ciencias, Universidad de
Extremadura, 06071 Badajoz, Spain.
Corresponding Author:
*spingler@chem.uzh.ch
*Ilaria.ciofini@chimieparistech.psl.eu
*gilles.gasser@chimieparistech.psl.eu; www.gassergroup.com; Tel. +33 1 44 27 56 02.
ORCID-ID:
Johannes Karges: 0000-0001-5258-0260
Franz Heinemann: 0000-0001-9590-443X
Federica Maschietto: 0000-0002-5995-2765
Marta Jakubaszek: 0000-0001-7590-2330
Chloé Subecz : 0000-0001-8510-4818
Mazzarine Dotou: 0000-0001-87814-6763
Olivier Blacque: 0000-0001-9857-4042
Bruno Goud: 0000-0003-1227-4159
Emilio Viñuelas Zahínos: 0000-0003-0634-1829
Bernhard Spingler: 0000-0003-3402-2016
Ilaria Ciofini: 0000-0002-5391-4522
Gilles Gasser: 0000-0002-4244-5097
KEYWORDS: Anticancer, Bioinorganic Chemistry, Medicinal Inorganic Chemistry, Metals in
Medicine, Photodynamic Therapy.
ABSTRACT:
The utilization of Photodynamic Therapy (PDT) for the treatment of various types of cancer
has gained increasing attention over the last decades. Despite the clinical success of approved
photosensitizers (PSs), their application is limited due to poor water solubility, aggregation,
photodegradation, and slow clearance from the body. To overcome these drawbacks, research
efforts are devoted towards the development of metal complexes and especially Ru(II)
polypyridine complexes based on their attractive photophysical and biological properties.
Despite the recent research developments, the vast majority of complexes utilize blue or UV-A
light to obtain a PDT effect, limiting the penetration depth inside the tissue and therefore, the
possibility to treat deep-seated or large tumors. To circumvent these drawbacks, we present the
first example of the DFT guided search for efficient PDT PSs with a substantial spectral red
shift towards the biological spectral window. Thanks to this design, we have unveiled a Ru(II)
polypyridine complex, which causes phototoxicity in the very-low micromolar-to-nanomolar
range at clinically relevant 595 nm, in monolayer cells as well as in 3D multicellular tumor
spheroids.
INTRODUCTION:
Photodynamic Therapy (PDT) is a non-invasive medical technique for the treatment of various
types of cancer (e.g., lung, bladder, esophageal, and brain cancer) as well as bacterial, fungal
or viral infections. The effect of PDT relies on the combination of an ideally non-toxic
molecule, a so-called photosensitizer (PS), oxygen, and light. The PS is injected either
systemically or locally. Upon light irradiation, the PS is uplifted to an excited singlet state from
which the PS can undergo an intersystem crossing process to reach an excited triplet state. This
state can influence the biological environment either by a Type I or Type II pathway. A Type I
mechanism is characterized by an electron or proton transfer from or to the PS, which leads to
the formation of reactive oxygen species (ROS) or other highly reactive radicals. In a Type II
mechanism, the energy is transferred to triplet oxygen (3O2) to generate singlet oxygen (1O2).
Due to their high reactivity, ROS and 1O2 can cause oxidative stress and damage in different
cellular compartments (i.e., membrane, nucleus, endoplasmic reticulum, lysosome,
mitochondria). Both of these mechanisms can happen simultaneously upon light irradiation
even so Type II pathway is the predominant one for most approved PSs.1-6
Photofrin is the most commonly used PS in PDT. It has been approved for the treatment of
bladder cancer, early-stage lung cancer, esophageal cancer, and early non-small cell lung
cancer. However, based on its low solubility and low absorption in the therapeutic window (i.e.,
600-900 nm), high concentrations, as well as high light doses are required for an adequate tumor
treatment making Photofrin not an ideal PS. Additionally, it was shown that this PS has an
exceptionally long half-life excretion time leading to severe photosensitivity for the patients.
Since the majority of investigated and approved PS are based on a tetrapyrrolic scaffold (i.e.,
porphyrins, chlorins, phthalocyanines), these PSs are likely to have similar drawbacks which
include 1) poor water solubility; 2) tedious synthesis and purification; 3) low cancer selectivity;
4) photobleaching effect and 5) slow clearance from the body causing photosensitivity.
Therefore, a need for modification of existing PSs or the development of new classes of PSs is
needed.7-14
Among the new classes of PSs investigated the development of Ru(II) polypyridyl complexes
as PDT PSs has received much attention due to their ideal photophysical and photochemical
properties (i.e., high water solubility, high chemical stability and photostability, intense
luminescence, large Stokes shifts, high 1O2 production).15-30 Worthy of note, the complex TLD1433 [Ru(dmb)2(IP-TT)]2+ (dmb=4,4′-dimethyl-2,2′-bipyridine, IP-TT=2-(2′,2″:5″,2′ ′′terthiophene)-imidazol[4,5-f][1,10]phenanthroline) has just entered phase II clinical trial as a
PDT PS for the treatment of non-muscle invasive bladder cancer in Canada.31-34 Despite these
remarkable properties, the majority of Ru(II)-based PS are typically excited using blue or UVA light and therefore suffer from a lack of absorption in the biological spectral window (600-
900 nm).35-38 Based on absorption and light scattering effects in the biological environment, the
light penetration depth into the tissue is low at this wavelength, which limits their application
to treat deep tumors or large tumors.39, 40 To overcome this limitation, there is a need for
optimization of the absorption properties of Ru(II)-based PSs. It has been well-established that
the photophysical properties, including absorption, emission as well as excited-state lifetimes
of Ru(II) polypyridyl complexes depend on the ligands bound to the Ru center. This variable
can, therefore, be tuned. In this context, we applied a combined experimental and theoretical
approach to design new suitable Ru-based PDT PSs. Based on the already well-established
biological activity of the complex [Ru(phen)3]2+ (phen = 1,10-phenanthroline) as a minor
groove binder41 and [Ru(bphen)3]2+ (bphen = 4,7-diphenyl-1,10-phenanthroline) as a
mitochondria and lysosome targeting agent42 and their ability to be effective PDT PSs43-45, we
decided to use [Ru(phen)2(bipy)]2+ and [Ru(bphen)2(bipy)]2+ (bipy = 2,2’-bipyridine)
derivatives as basic scaffolds. In this investigation, the electronic properties, the origin, and the
magnitude of red shift towards the biologic spectral window are disclosed. The resulting
complexes (1-7, Figure 1) were synthesized, characterized, and biologically evaluated in-depth.
Thanks to this combined study, a highly active Ru(II)-based PDT PS that can be excited up to
595 nm could be unveiled.
RESULTS AND DISCUSSION
Rational Design
As the basis of the design of Ru(II) polypyridine complexes as PDT PSs with red-shifted
absorption near or in the biological spectral window, the [Ru(phen)2(bipy)]2+ scaffold was used
due to its synthetic accessibility and generally high physical stability. To pursue this aim,
systematic modification on the bipyridine moiety was investigated, and these effects studied by
a theoretical and experimental approach.
It is well known that, in a simplified picture, the highest occupied orbitals in a pseudooctahedral Ru(II) polypyridyl complex are mainly consisting of the Ruthenium t2g-d-orbitals
while the lowest occupied orbitals typically correspond
to π*-orbitals localized on the
ligands.46, 47 Therefore, the lowest intense absorption band is expected to be of metal to ligand
charge transfer (MLCT) character stemming from electronic transitions from the t2g manifold
to the empty ligands lowest-lying orbitals and leading to the population of a singlet state of
MLCT nature under light irradiation. A simple way to red shift the MLCT absorption energy
is, therefore, to decrease the HOMO-LUMO gap by an ad-hoc functionalization of the ligands.
In particular, functionalization of the ligands with electron-donating and electron-withdrawing
(EDG/EWG) groups is expected to increase the occupied MOs and lower the LUMO energy,
respectively.
In the case of the unsubstituted compound 1, the ligands are not strictly equivalent (two phen
and one bipy ligand) so that the t2g orbitals are not expected to be strictly degenerate.
Nonetheless, from the computed MOs energies of 1, it can be seen that the difference in energy
between the t2g orbitals is very tiny (roughly 0.04 eV) and the same holds for the LUMOs of π*
character (roughly 0.08 eV) with contributions arising both from the phen and the bipy ligands.
As a consequence, the functionalization of any of the two ligands shall induce a shift of the gap
but is indeed expected to be easier in the case of the bipy, due to the reduced steric congestion
around this ligand. For this reason, EDGs and EWGs were exclusively introduced only on the
bipy ligand (1-5, Figure 1, optimized cartesian coordinates Table S1-S5).
Figure 1. Chemical structures of the Ru(II) polypyridyl complexes investigated in this work.
The complexes 1-7 were isolated as PF6- salts.
For this purpose, the energies of the frontier molecular orbitals were computed (Figure 2).
Indeed, functionalization with -Me (2) (a weakly EDG) only negligibly affects the gap
(reducing from 3.99 eV for 1 to 3.97 eV for 2). A slightly more significant effect is obtained by
weak EWGs such as -Br (3) and -CONH2 (4, 3.83 eV, and 3.77 eV, respectively), which induce
a small stabilization of the LUMO. These observations are in line with the results previously
obtained by some of us48 when functionalizing with a -CHO group, a better EWG for which the
computed gap is indeed 3.47 eV. On the other hand, functionalization with the vinyl
dimethylamine-EDG (5) results in a substantial reduction of the HOMO-LUMO gap (to
3.24 eV, roughly 0.7 eV lower than the native compound (1) due to a sizable increase of the
HOMO energy. Nonetheless, it should be underlined that the gap is reduced here due to the
presence of occupied orbitals centered on the vinyl dimethylamine group in the gap. Therefore,
although de facto the gap is substantially reduced, there is no destabilization of the t2g manifold
so that the bright MLCT transition (occurring from the t2g orbitals to the π* ligand orbitals) is
expected not to be affected (that is red-shifted).
To capitalize on this theoretical insight, we additionally examined the functionalization with a
methyl and vinyl dimethylamine group on the [Ru(bphen)2(bipy)]2+ scaffold 6-7 (optimized
cartesian coordinates Table S6-S7). Interestingly, changing the ligand scaffold from phen to
bphen does not significantly affect the gap – as expected due to the small electronic effect
induced by the presence of the four phenyl groups on the phen ligands. Indeed comparing
compounds 2 and 6 or 5 and 7 (that are the analogous in the two series), a difference of only
0.1 and 0.07 eV in the gap, respectively, can be observed.
Figure 2. Computed frontier orbitals’ energies and HOMO-LUMO gaps (in eV).
Occupied/virtual orbitals energies are represented as black/blue line. Blue background:
Ru(phen)2(bipy)2+ skeleton. Purple background: Ru(bphen)2(bipy)2+ skeleton.
Synthesis and Characterization
Based on the theoretical design, the Ru(II) polypyridine complexes 1-7 (Figure 1) were
synthesized. To date, the synthesis of complexes 3–5 and 7 has not been yet reported, while
complexes 149, 250, and 651 are known. However, in this study, slightly different experimental
procedures than the previously described were employed to obtain these compounds (for
experimental protocols see supporting information). The identity of all complexes was
confirmed by 1H, 13C-NMR (Scheme S1, Figures S1-S14), HRMS, and the purity by elemental
analysis. In addition, the molecular structures of complexes 1-3 (Figure S15-17, Table S8-S9)
were confirmed by single-crystal X-ray diffraction studies. The crystal structure of compound
1 has already been characterized by Huang and Ogawa52, with the exception that the crystal
structure presented here contains one solvent molecule of acetonitrile per ruthenium complex.
In all molecular structures, the Ru(II) central atom adopts a distorted octahedral geometry
chelated by two 1,10-phenanthroline ligands and one 2,2’-bipyridine ligand with Ru – N bond
lengths ranging from 2.046(3) to 2.078(3) Å, Nphen – Ru – Nphen angles from 79.48(12) to
80.1(2)°, and Nbipy – Ru – Nbipy angles from 78.55(10) to 78.98(13)°. It is worth to note that the
substitution of the bipyridine ligand by methyl groups in 2 and bromo ligands in 3 has no
significant influence on the Ru – N bond distances.
Photophysical properties
The absorption spectra of the compounds 1-7 were measured in CH3CN (Figure S19, extinction
coefficients Table S10) and compared with the computed spectra (Figure 3). Although in the
simulated spectra the energy of the MLCT band (around 450 nm) is systematically
overestimated while the higher energy ligand centered (LE) band (around 300 nm) is better
reproduced, small shifts towards the spectral windows of interest and a rise in intensity for the
lowest energy band is indeed observed for the compounds 5, 6 and 7.
Of note, in the case of 5 and 7, several electronic transitions are computed to contribute to the
first -lowest energy- absorption band. The most intense has still an MLCT character while the
one occurring at lower energy (less intense than those of MLCT character) and responsible for
the tail and red-shift of the band are predicted to be essentially ligand centered. These transitions
are indeed of HOMO-LUMO type and, as discussed above, corresponding essentially to a
transition from the vinyl dimethylamine group to the π* orbitals of the ligand. This can be
visualized and understood from the maps of the difference in density between ground (GS) and
excited state (ES) for two representative transitions of compound 6 (Figure S18a) and 7 (Figure
S18b). For both complexes, the lowest energy transition (first electronic transition ES1) and the
most intense one contributing to the first band (ES 4 and ES 9 for 6 and 7, respectively) were
analyzed. In Figure S18, density depletion/increase regions upon excitation for each are
represented by blue/yellow zones, and the barycenters of these regions - depicted as blue/yellow
dots - can be interpreted as the position of the electron and hole upon excitation. It can be clearly
seen that while for complex 6, both transitions have a clear MLCT character though not
necessarily involving the same ligand, in the case of 7, in agreement with the MO diagram, the
lowest energy transition is of interligand type and mostly involving the vinyl dimethylaminepart. Therefore, even if a redshift of the first absorption band is predicted and indeed
experimentally observed, it is not necessarily expected to correlate with an improvement of the
phototherapeutic properties that are indeed linked to the population of a MLCT state.
Figure 3. Simulated (blue) and experimental (black) spectra of compounds 1-7 in CH3CN
(c = 7.5 µM). Computed vertical electronic transitions are depicted as vertical blue bars.
Corresponding oscillator strength (f) is given in a.u.
Following this, the luminescence of the Ru(II) polypyridine complexes upon excitation at 355
nm was investigated. The maxima of the emission signals (Figure S20) were measured and
found to be between 600-710 nm. Interestingly, complexes 5 and 7, which showed the highest
red shift in absorption, also demonstrated the strongest red shift in their emission maximum.
All complexes demonstrated a large Stokes shift implying minimal inference between
excitation and emission. The luminescence quantum yields were found with values between
5.0% - 1.4% (Table S10) for 1-4, 6 and are therefore in the same range then other Ru(II)
polypyridine
complexes.53, 54 On the contrary, the luminescence of 5 and 7 were barely measurable - with
luminescence quantum yields >0.1%. This is consistent with the computed vertical absorption
(see before) highlighting that for these two complexes the lowest lying excited states are of LC
character. This result is also in agreement with the exceptionally low luminescence quantum
yield of (E,E’)-4,4’-bis(N,N’-dimethylaminovinyl)-2,2’-bipyridine in dichloromethane (1.5%)
in comparison to other substituted 2,2’-bipyridines55 and of the [Ru((E,E’)-4,4’-bis(N,N’dimethylaminovinyl)-2,2’-bipyridine)3]2+ complex in CH3CN (>0.1%),56 which were recently
reported.
The excited-state lifetimes were determined in degassed and air-saturated CH3CN solution to
investigate the influence of the presence of oxygen. The obtained values (Figure S21-S27, Table
S10) were found to be in the nanosecond scale in a degassed (312 – 1387 ns) and air saturated
(55 – 326 ns) solution. All measured lifetimes were found to be in the same range as for other
Ru(II) polypyridine complexes.53, 54 Importantly, the data shows that the presence of oxygen
has a significant influence on the lifetime of the excited state for all complexes indicating that
molecular oxygen can interact with the triplet state of the complex.
The generation of singlet oxygen (1O2) was quantitatively measured upon excitation at 450 nm
by two complementary methods: (i) direct by measurement of the phosphorescence of 1O2, (ii)
indirect by temporal monitoring the change of absorption of a 1O2 scavenger.57, 58 Complexes
1-4, 6 were found to have 1O2 quantum yields (Table S11) between 53-69% in CH3CN and 536% in an aqueous solution, suggesting an application as a PDT agent. These values are
comparable with those previously reported for related compounds.59, 60 In comparison, the 1O2
quantum yields of the (E,E’)-4,4’-bis(N,N’-dimethylaminovinyl)-2,2’-bipyridine coordinated
complexes 5 and 7 were found to be drastically lower with values of 22-35% in CH3CN and 721% in an aqueous solution. This was expected as these compounds show an untypical excited
state behavior (emission, luminescence, lifetime) which is also explained by DFT calculations.
Stability
The stability of a compounds is an essential parameter for their use as a PDT agent. As a first
experiment, the stability of the complexes was investigated in a DMSO solution since this
solvent was shown to be problematic for certain drug (candidates).61-63 For this purpose,
solutions of the complexes in DMSO-d6 were prepared and stored in a NMR tube in the dark at
room temperature. A 1H-NMR spectrum was measured directly after preparing the solution after
one, two and seven days. For complexes 1-4 and 6 (Figures S28-S31, S33), no significant
change in the spectra were observed, indicating that no decomposition occurred. In contrast to
this, small changes in the spectra for compounds 5 and 7 could be observed. For both
compounds, changes in the signals could be detected after 7 days (Figures S32, S34). This
indicates that these compounds are not stable in DMSO. To assess the compatibility of the
compounds under biological conditions, the stability of the complexes was tested in pooled
human plasma. The complexes were incubated for 48 h in the dark with coffeine as an internal
standard, which was previously shown to be stable under these conditions64 and then analysed
by HPLC (Figures S35-41). The stability of complexes 1-4 and 6 and the previously mentioned
decomposition of compounds 5 and 7 were confirmed. Based on these findings, the stability of
compounds 5 and 7 has been investigated more in detail by incubation of these complexes with
shorter time intervals (0 h, 4 h, 12 h, 24 h, 48 h) in the dark. 5 shows first sign of degradation
after 12 h and compound 7 after 24 h. The degradation of both complexes advanced in the
investigated time interval, but still show unreacted complex even after 48 h incubation.
Following this, the potential decomposition of the complexes upon light irradiation was also
tested as previous studied have shown that the stability of metal complexes could be influenced
upon light exposure.65, 66 This is crucially important as some of the currently approved PDT
agents are associated with a strong photobleaching effect. The complexes were exposed to a
continuous LED irradiation at 450 nm and the absorption spectra monitored. As a positive
control [Ru(bipy)3]Cl2 and as a negative control Protoporphyrin IX was used. The comparison
of the spectra shows that complexes 1-4 and 6 (Figure S42-46, 48) have a photobleaching effect
in a similar range than [Ru(bipy)3]Cl2 (Figure S41). However, compounds 5 and 7 were found
to be strongly affected by light irradiation with a loss of about half of their absorbance after one
minute (Figure S47, 49). This effect is even stronger than that observed for Protoporphyrin IX
(Figure S50).
Biological Evaluation
The lipophilicity/hydrophilicity of the compounds was determined by measuring the
distribution coefficient (logP) between an organic octanol and aqueous phosphate buffer saline
phase (Table S12). The complexes based on a [Ru(phen)2(bipy)]2+ scaffold (1-5) were found
with logP values between +0.2 - +0.7 and the complexes based on a [Ru(bphen)2(bipy)]2+
scaffold (6-7) between +1.4 - +1.7. As all complexes were found majorly in the organic phase,
their lipophilicity is indicated.
Following this, the cellular uptake of the compounds was investigated. Amount of Ru metal
accumulated inside the human cervical carcinoma (HeLa) cells upon incubation for 4 h was
determined by inductively coupled plasma mass spectrometry (ICP-MS). As expected, the
compounds 6-7 which are based on a [Ru(bphen)2(bipy)]2+ scaffold showed a 2.1-5.8 times
higher cellular accumulation (Figure S51) in comparison to compounds 1-5, in agreement with
their logP values.
To determine the potential of the complexes to act as PDT agents, mouse colon carcinoma (CT26), human glioblastoma (U87) human glioblastoma astrocytoma (U373), human cervical
carcinoma (HeLa) as well as non-cancerous retina pigmented epithelial (RPE-1) cell lines were
treated with the complexes. Their cytotoxicity in the dark and upon light exposure was
investigated using fluorometric cell viability assay (Table 1). Ideally, a PDT PS should be nontoxic in the dark and highly toxic upon light exposure. Promisingly, complexes 1-5 and 7 were
found to be non-cytotoxic in the dark in all chosen cell lines (IC50 >100 µM), while compound
6 showed a cytotoxic profile in the range from 3.09 to 28.77 µM in all investigated cell lines.
Upon irradiation at 480 nm (10 min, 3.21 J cm-2), no or only poor toxicity (IC50 range from >100
to 52.54 µM) was observed for complexes based on a [Ru(phen)2(bipy)]2+ scaffold (1-5). In
contrast, compounds based on the [Ru(bphen)2(bipy)]2+ scaffold (6-7) showed a notable
phototoxicity upon light irradiation (Phototoxic index (PI)- IC50 in the dark/IC50 in upon
irradiation, ranges from 6.5 to 42.5). This effect can be attributed to the significantly higher
uptake of 6 and 7. Overall, considering the instability of complex 7 in DMSO and human plasma
and the absence/low phototoxicity of complexes 1-5, complex 6 was further studied.
Table 1. IC50 values (µM) for the complexes 1-7 and Protoporphyrin IX (PpIX) in mouse colon
carcinoma (CT-26), human glioblastoma (U87), human glioblastoma astrocytoma (U373),
human cervical carcinoma (HeLa) and non-cancerous retina pigmented epithelial (RPE-1) cell
lines in the dark and upon light irradiation (480 nm, 10 min, 3.21 J cm-2).
CT-26
1
U87
Dark
Light
PI
Dark
>100
>100
-
>100
U373
HeLa
RPE-1
Light
PI
Dark
Light
PI
Dark
Light
PI
Dark
Light
PI
93.68
>1
>100
>100
-
>100
>100
-
>100
>100
-
>1
>100
>100
-
>100
>100
-
>100
>100
-
±
2.50
2
>100
91.24
>1
>100
71.40
±
±
7.54
5.67
3
>100
85.71
>1
>100
>100
-
>100
>100
-
>100
>100
-
>100
>100
-
>1
>100
>100
-
>100
>100
-
>100
>100
-
>100
>100
-
>2
>100
>100
-
>100
>100
-
>100
>100
-
>100
>100
-
16.3
42.5
12.4
22.2
34.9
±
9.47
4
>100
72.59
±
7.44
5
>100
52.54
±
6.04
6
7
3.09
0.19
28.45
0.67
23.37
1.89
13.57
0.61
28.77
0.83
±
±
±
±
±
±
±
±
±
±
0.30
0.04
1.97
0.13
0.53
0.07
1.30
0.06
0.94
0.03
94.47
6.62
±
±
±
±
±
±
7.38
0.07
0.54
0.81
1.29
0.50
14.3
>100
7.90
>12.7
>100
14.85
>6.7
>100
15.21
>6.5
>100
8.95
>11.2
Following this preliminary examination, the ability to cause a phototoxic effect at longer
wavelengths towards the biological spectral window was further evaluated. CT-26 cell line
which was previously shown to be the strongest affected by this compound was chosen for
subsequent studies. Importantly, light irradiation of the treated cells at 510 nm or 540 nm caused
a phototoxic effect (Table 2). Strikingly, even irradiation at 595 nm generated a phototoxic
effect in cells. It has to be noted that the lack of CO2 atmosphere during irradiation also
contributed to the obtained results. Nevertheless, the calculated PI values are reliable, as cells
used as dark control were also incubated for the same amount of time at 37 °C in non-CO2
atmosphere. Overall, these results make compound 6 an impressive candidate as a PDT agent.
Table 2. IC50 values (µM) for 6 in mouse colon carcinoma (CT-26) cells in the dark and upon
light irradiation at 510 nm (40 min, 10.00 J cm-2), 540 nm (60 min, 14.25 J cm-2) and 595 nm
(2 h, 22.47 J cm-2).
Wavelength /nm
Dark
Light
PI
510 nm
4.18 ± 0.56
0.20 ± 0.005
20.6
540 nm
3.27 ± 0.64
0.34 ± 0.005
9.6
595 nm
1.41 ± 0.003
0.06 ± 0.004
23.5
To have a deeper insight in the mechanism of action of compound 6, its cellular localisation in
HeLa cell line was determined by confocal microscopy experiments. After 2 h incubation (14
µM), the complex was detected in the cytoplasm (see Figure S52). Immunofluorescence studies
with GM130 (cis-Golgy protein), TGN46 (trans-Golgy protein), KDEL (endoplasmic reticulum
protein retention receptor) and LAMP (lysosome- associated membrane glycoprotein)
antibodies demonstrated that compound 6 did not colocalize with any of them (Figure 4a).
Correlation analysis including Pearson’s R value as well as Manders’ M1 and Manders’s M2
values confirmed the lack of colocalisation of the tested probes with complex 6 (Figure 4b). It
is possible that the cytosolic localisation of our complex could be explained by its binding to
the cytoskeleton as recently reported for structurally similar complex by the group of
MacDonnell.67
Figure 4. a) Immunofluorescent images of HeLa cells treated with complex 6 (14 µM, 30 min).
DNA visualised by NucBlue staining, immunofluorescence for GM130, TGN46, KDEL and
LAMP proteins shown in green, complex 6 shown in red. Scale bar, 20 µm. b) Person’s R,
Manders’ M1 and Manders’ M2 colocalisation values obtained for complex 6 and fluorescent
probes.
To further study the mechanism of action of complex 6, its influence on cellular metabolism
was studied. Seahorse XF instrument was used which allows for real time measurements of
oxygen consumption rate (OCR) and extracellular acidification rate (ECAR) in cells. To
observe the effect of the compound 6 on oxidative phosphorylation (ATP production in
mitochondria through electron transport chain), the Mito Stress test was performed. In this test,
sequential injections of specific inhibitors of the electron transport chain proteins allows for
determination of the effect that the compound has on the mitochondrial metabolism of the tested
cells. Briefly, the cells were treated (4 h, 1µM) with complex 6 as well as with cisplatin and 5ALA (5-aminolevulinic acid) - precursor of protoporphyrin IX (PpIX), a known
photosensitizer, as controls.68 After the incubation time, the cells were irradiated at 595 nm (2 h,
22.47 J cm-2, see Figure S53) and the Mito Stress Test was performed. Strikingly, the data shows
that only the cells, which were treated with complex 6 and irradiated, had their metabolism
impaired right after the irradiation process. Injection of oligomycin (a specific inhibitor of ATP
synthase) or FCCP (an uncoupling agent) did not affect their oxygen consumption rates. The
mitochondrial membrane of these cells lost the capacity to restore the proton balance. ATP
production was inhibited and spare respiratory capacity (difference between OCR values of
maximal respiration and basal respiration) was strongly reduced, contrary to the cells treated
with complex 6 that were not irradiated (Figure 5a and Figure S54).
Additional tests investigating whether the glycolysis is also affected were performed. Indeed,
the glycolysis process is also severely impaired in the cells that are treated with complex 6 and
irradiated (Figure 5b and Figure S55). It is known that the glycolysis process is significantly
reduced during apoptosis.69 Additionally, mitochondria are important compartment, which are
responsible for triggering an intrinsic cell death.70 It is then likely that the start of apoptosis is
responsible for the initial effect in the cellular metabolism observed. A similar metabolic
response could not be noticed for the cisplatin. This phenomenon could be explained by the
short incubation time (only 4 h) and the very low concentration tested (1 µM) that is not
sufficient to trigger apoptosis by this drug in CT-26 cell line. Overall, compound 6 has an
immediate effect on irradiated cells but not in the ones kept in the dark, resulting in disturbed
mitochondrial respiration and glycolysis process.
Figure 5. a) Mito Stress Test profile in CT-26 cells after 4 h treatment and 2 h irradiation at
595 nm; oxygen consumption rate changes after treatment with specific electron transport chain
inhibitors, namely oligomycin (inhibitor of ATP synthase (complex V)), FCCP (uncoupling
agent), antimycin-A (complex III inhibitor) and rotenone (complex I inhibitor). b) Glycolysis
Stress Test profile in CT-26 cells after 4 h treatment and 2 h irradiation at 595 nm; extracellular
acidification rate that corresponds to the glycolysis process changes after treatment with glucose
(basal level of glycolysis in cells), oligomycin (inhibitor of ATP synthase (complex V)mitochondria inhibition), 2-deoxyglucose (analog of glucose that inhibits glycolytic pathway).
After evaluation of the (photo-)cytotoxicity on 2D monolayer cells, the effect of complex 6 on
multicellular tumor spheroids (MCTS) was investigated. This is of special interest as many
anticancer drug candidates have failed the translation from monolayer cells to an in vivo model
due to compromised drug delivery. MCTS are small spherical cell aggregates that mimic cell
tumors. They can simulate the gradient of nutrients availability from upper cell layers, that are
highly exposed, to lower layers and are able to model the potential penetration of a drug inside
a 3D struture.71, 72 Therefore, compound 6 was incubated for 24 h in HeLa MCTS and its
cytotoxic effect determined by measurement of the ATP concentration. Importantly, upon
irradiation at 595 nm (2 h, 22.47 J cm-2), compound 6 showed a phototoxic effect (IC50,dark =
29.42 ± 4.60 μM, IC50,595nm = 20.07 ± 4.15 μM, PI595nm = 1.5), indicating that the compound is
able to exert its action inside the 3D MCTS and act as a PDT agent.
CONCLUSION
In summary, we have combined the theoretical understanding provided by DFT calculations
with the photophysical and biological experimental evaluation of Ru(II) polypyridine
complexes as PSs for PDT. Thanks to this rational design, ruthenium complexes with a strong
red shift in their absorption profile could be successfully prepared. While the (E,E’)-4,4’bis(N,N’-dimethylaminovinyl)-2,2’-bipyridine coordinated complexes showed the desired red
shift, they were however found to have poor photophysical properties (luminescence, 1O2
production) and poor stability. In contrast, the [Ru(bphen)2(bmb)]2+ complex was found to have
an absorption tail towards the biological spectral window. While being stable in human plasma
as well as upon light irradiation, it was found to localize in the cytoplasm of HeLa cells. Upon
irradiation at clinically relevant 595 nm it led to the disturbance of mitochondrial respiration
and glycolysis process in 2D monolayer cells as well as 3D MCTS. We strongly believe that
the rational design approach to unveil novel (metal-based) PDT PSs have a great potential in
the development of PSs for long-wavelength PDT. We are planning to investigate the in vivo
efficiency of compound 6 in the future.
ACKNOWLEDGMENT
We thank Dr. Philippe Goldner for access to state-of-the-art laser apparatus. This work was
financially supported by an ERC Consolidator Grant PhotoMedMet to G.G. (GA 681679) and
has received support under the program “Investissements d’ Avenir” launched by the French
Government and implemented by the ANR with the reference ANR-10-IDEX-0001-02 PSL
(G.G.). I.C and F.M. gratefully acknowledge the European Research Council (ERC) for funding
(ERC Consolidator Grant STRIGES to I.C., GA No 648558).
REFERENCES
1.
D. E. Dolmans, D. Fukumura and R. K. Jain, Nat. Rev. Cancer, 2003, 3, 380-387.
2.
K. Plaetzer, B. Krammer, J. Berlanda, F. Berr and T. Kiesslich, Lasers Med. Sci., 2009,
24, 259-268.
3.
S. Bonnet, Dalton Trans., 2018, 47, 10330-10343.
4.
R. Bonnett, Chem. Soc. Rev., 1995, 24, 19-33.
5.
T. J. Dougherty, C. J. Gomer, B. W. Henderson, G. Jori, D. Kessel, M. Korbelik, J. Moan
and Q. Peng, J. Natl. Cancer Inst., 1998, 90, 889-905.
6.
B. W. Henderson and T. J. Dougherty, Photochem. Photobiol., 1992, 55, 145-157.
7.
A. E. O’Connor, W. M. Gallagher and A. T. Byrne, Photochem. Photobiol., 2009, 85,
1053-1074.
8.
A. Naik, R. Rubbiani, G. Gasser and B. Spingler, Angew. Chem. Int. Ed., 2014, 53, 69386941.
9.
F. Heinemann, J. Karges and G. Gasser, Acc. Chem. Res., 2017, 50, 2727-2736.
10.
J. Karges, U. Basu, O. Blacque, H. Chao and G. Gasser, Angew. Chem. Int. Ed., 2019,
58, 14334-14340.
11.
P. M. Antoni, A. Naik, I. Albert, R. Rubbiani, S. Gupta, P. Ruiz-Sanchez, P. Munikorn,
J. M. Mateos, V. Luginbuehl, P. Thamyongkit, U. Ziegler, G. Gasser, G. Jeschke and B.
Spingler, Chem. Eur. J., 2015, 21, 1179-1183.
12.
P. Agostinis, K. Berg, K. A. Cengel, T. H. Foster, A. W. Girotti, S. O. Gollnick, S. M.
Hahn, M. R. Hamblin, A. Juzeniene and D. Kessel, CA Cancer J. Clin., 2011, 61, 250281.
13.
S. Callaghan and M. O. Senge, Photochem. Photobiol. Sci., 2018, 17, 1490-1514.
14.
L. Schneider, M. Larocca, W. Wu, V. Babu, R. Padrutt, E. Slyshkina, C. König, S. Ferrari
and B. Spingler, Photochem. Photobiol. Sci., 2019, 18, 2792-2803.
15.
C. Mari, V. Pierroz, S. Ferrari and G. Gasser, Chem. Sci., 2015, 6, 2660-2686.
16.
S. Monro, K. L. Colón, H. Yin, J. Roque III, P. Konda, S. Gujar, R. P. Thummel, L.
Lilge, C. G. Cameron and S. A. McFarland, Chem. Rev., 2019, 119, 797-828.
17.
L. Zeng, P. Gupta, Y. Chen, E. Wang, L. Ji, H. Chao and Z.-S. Chen, Chem. Soc. Rev.,
2017, 46, 5771-5804.
18.
L. K. McKenzie, H. E. Bryant and J. A. Weinstein, Coord. Chem. Rev., 2019, 379, 2-29.
19.
A. Li, C. Turro and J. J. Kodanko, Acc. Chem. Res., 2018, 51, 1415-1421.
20.
J. Liu, C. Zhang, T. W. Rees, L. Ke, L. Ji and H. Chao, Coord. Chem. Rev., 2018, 363,
17-28.
21.
F. E. Poynton, S. A. Bright, S. Blasco, D. C. Williams, J. M. Kelly and T. Gunnlaugsson,
Chem. Soc. Rev., 2017, 46, 7706-7756.
22.
M. Jakubaszek, J. Rossier, J. Karges, J. Delasoie, B. Goud, G. Gasser and F. Zobi, Helv.
Chim. Acta, 2019, 102, e1900104.
23.
J. Shum, P. K.-K. Leung and K. K.-W. Lo, Inorg. Chem., 2019, 58, 2231-2247.
24.
K. Qiu, Y. Chen, T. W. Rees, L. Ji and H. Chao, Coord. Chem. Rev., 2019, 378, 66-86.
25.
J. Karges, M. Jakubaszek, C. Mari, K. Zarschler, B. Goud, H. Stephan and G. Gasser,
ChemBioChem, doi:10.1002/cbic.201900419.
26.
R. Lincoln, L. Kohler, S. Monro, H. Yin, M. Stephenson, R. Zong, A. Chouai, C. Dorsey,
R. Hennigar, R. P. Thummel and S. A. McFarland, J. Am. Chem. Soc., 2013, 135, 1716117175.
27.
Y. Ellahioui, M. Patra, C. Mari, R. Kaabi, J. Karges, G. Gasser and S. Gómez-Ruiz,
Dalton Transactions, 2019, 48, 5940-5951.
28.
B. S. Howerton, D. K. Heidary and E. C. Glazer, J. Am. Chem. Soc., 2012, 134, 83248327.
29.
J. D. Knoll and C. Turro, Coord. Chem. Rev., 2015, 282-283, 110-126.
30.
A. M. Palmer, B. Peña, R. B. Sears, O. Chen, M. E. Ojaimi, R. P. Thummel, K. R.
Dunbar and C. Turro, Philos. Trans. R. Soc. A, 2013, 371, 20120135.
31.
https://theralase.com/pressrelease/theralase-annouces-first-patient-treated-in-phase-iinon-muscle-invasive-bladder-cancer-clinical-study/, last accessed 20.09.2019.
32.
J. Fong, K. Kasimova, Y. Arenas, P. Kaspler, S. Lazic, A. Mandel and L. Lilge,
Photochem. Photobiol. Sci., 2015, 14, 2014-2023.
33.
P. Kaspler, S. Lazic, S. Forward, Y. Arenas, A. Mandel and L. Lilge, Photochem.
Photobiol. Sci., 2016, 15, 481-495.
34.
S. A. McFarland, A. Mandel, R. Dumoulin-White and G. Gasser, Curr. Opin. Chem.
Biol., 2020, 56, 23-27.
35.
S. M. Cloonan, R. B. P. Elmes, M. Erby, S. A. Bright, F. E. Poynton, D. E. Nolan, S. J.
Quinn, T. Gunnlaugsson and D. C. Williams, J. Med. Chem., 2015, 58, 4494-4505.
36.
J. Karges, O. Blacque, M. Jakubaszek, B. Goud, P. Goldner and G. Gasser, J. Inorg.
Biochem., 2019, 198, 110752.
37.
H. Yin, M. Stephenson, J. Gibson, E. Sampson, G. Shi, T. Sainuddin, S. Monro and S.
A. McFarland, Inorg. Chem., 2014, 53, 4548-4559.
38.
E. Wachter, D. K. Heidary, B. S. Howerton, S. Parkin and E. C. Glazer, Chem. Commun.,
2012, 48, 9649-9651.
39.
K. Ogawa and Y. Kobuke, Anti-Cancer Agents Med. Chem., 2008, 8, 269-279.
40.
B. C. Wilson, W. P. Jeeves and D. M. Lowe, Photochem. Photobiol., 1985, 42, 153-162.
41.
M. Eriksson, M. Leijon, C. Hiort, B. Norden and A. Graeslund, J. Am. Chem. Soc., 1992,
114, 4933-4934.
42.
M. Dickerson, Y. Sun, B. Howerton and E. C. Glazer, Inorg. Chem., 2014, 53, 1037010377.
43.
H. Audi, D. Azar, F. Mahjoub, S. Farhat, Z. El-Masri, M. El-Sibai, R. J. Abi-Habib and
R. S. Khnayzer, J. Photochem. Photobiol. A, 2018, 351, 59-68.
44.
S. Mehanna, N. Mansour, H. Audi, K. Bodman-Smith, M. A. Mroueh, R. I. Taleb, C. F.
Daher and R. S. Khnayzer, RSC Adv., 2019, 9, 17254-17265.
45.
N. Mansour, S. Mehanna, M. A. Mroueh, H. Audi, K. Bodman-Smith, C. F. Daher, R. I.
Taleb, M. El-Sibai and R. S. Khnayzer, Eur. J. Inorg. Chem., 2018, 2018, 2524-2532.
46.
S. Finck, J.-T. Issenhuth, S. Despax, C. Sirlin, M. Pfeffer, C. Poidevin, C. Gourlaouen,
A. Boeglin and C. Daniel, J. Organomet. Chem., 2014, 760, 248-259.
47.
S. Campagna, F. Puntoriero, F. Nastasi, G. Bergamini, V. Balzani, Photochemistry and
Photophysics of Coordination Compounds I, ed. V. Balzani, S. Campagna, Springer
Berlin Heidelberg, 2007, 117-214.
48.
J. Karges, F. Heinemann, F. Maschietto, M. Patra, O. Blacque, I. Ciofini, B. Spingler
and G. Gasser, Biorg. Med. Chem., 2019, 27, 2666-2675.
49.
G. Crosby and W. Elfring, J. Phys. Chem., 1976, 80, 2206-2211.
50.
W. E. Jones Jr, R. A. Smith, M. T. Abramo, M. D. Williams and J. Van Houten, Inorg.
Chem., 1989, 28, 2281-2285.
51.
O. Mazuryk, K. Magiera, B. Rys, F. Suzenet, C. Kieda and M. Brindell, J. Biol. Inorg.
Chem., 2014, 19, 1305-1316.
52.
W. Huang and T. Ogawa, Polyhedron, 2006, 25, 1379-1385.
53.
M. J. Cook, A. P. Lewis, G. S. McAuliffe, V. Skarda, A. J. Thomson, J. L. Glasper and
D. J. Robbins, J. Chem. Soc., Perkin Trans. 2, 1984, 1293-1301.
54.
V. Balzani and A. Juris, Coord. Chem. Rev., 2001, 211, 97-115.
55.
O. Maury, J.-P. Guégan, T. Renouard, A. Hilton, P. Dupau, N. Sandon, L. Toupet and H.
Le Bozec, New J. Chem., 2001, 25, 1553-1566.
56.
J. Karges, O. Blacque, P. Goldner, H. Chao and G. Gasser, Eur. J. Inorg. Chem., 2019,
3704-3712.
57.
J. Karges and G. Gasser, Inorg. Chim. Acta, 2020, 499, 119196.
58.
J. Karges, P. Goldner and G. Gasser, Inorganics, 2019, 7, 4.
59.
A. A. Abdel-Shafi, P. D. Beer, R. J. Mortimer and F. Wilkinson, Helv. Chim. Acta, 2001,
84, 2784-2795.
60.
D. Garcìa-Fresnadillo, Y. Georgiadou, G. Orellana, A. M. Braun and E. Oliveros, Helv.
Chim. Acta, 1996, 79, 1222-1238.
61.
M. Patra, T. Joshi, V. Pierroz, K. Ingram, M. Kaiser, S. Ferrari, B. Spingler, J. Keiser
and G. Gasser, Chem. Eur. J., 2013, 19, 14768-14772.
62.
M. D. Hall, K. A. Telma, K.-E. Chang, T. D. Lee, J. P. Madigan, J. R. Lloyd, I. S.
Goldlust, J. D. Hoeschele and M. M. Gottesman, Cancer Res., 2014, 74, 3913-3922.
63.
S. Keller, Y. C. Ong, Y. Lin, K. Cariou and G. Gasser, J. Organomet. Chem., 2019,
121059.
64.
S. J. Bruce, I. Tavazzi, V. r. Parisod, S. Rezzi, S. Kochhar and P. A. Guy, Anal. Chem.,
2009, 81, 3285-3296.
65.
U. Basu, J. Karges, F. Chotard, C. Balan, P. Le Gendre, G. Gasser, E. Bodio and R.
Malacea Kabbara, Polyhedron, 2019, 172, 22-27.
66.
A. K. Renfrew, J. Karges, R. Scopelliti, F. D. Bobbink, P. Nowak-Sliwinska, G. Gasser
and P. Dyson, ChemBioChem, 2019, 20, 2876-2882.
67.
N. Alatrash, F. H. Issa, N. S. Bawazir, S. J. West, K. E. Van Manen-Brush, C. P. Shelor,
A. S. Dayoub, K. A. Myers, C. Janetopoulos, E. A. Lewis and F. M. MacDonnell, Chemi.
Sci., 2019, doi: 10.1039/C9SC05671H.
68.
K. Mahmoudi, K. L. Garvey, A. Bouras, G. Cramer, H. Stepp, J. G. Jesu Raj, D. Bozec,
T. M. Busch and C. G. Hadjipanayis, J. Neurooncol., 2019, 141, 595-607.
69.
L. A. Pradelli, E. Villa, B. Zunino, S. Marchetti and J. E. Ricci, Cell Death Dis., 2014,
5, e1406-e1406.
70.
E. F. Mason and J. C. Rathmell, Biochim. Biophys. Acta, 2011, 1813, 645-654.
71.
J. Friedrich, C. Seidel, R. Ebner and L. A. Kunz-Schughart, Nat. Protoc., 2009, 4, 309324.
72.
T. T. Goodman, C. P. Ng and S. H. Pun, Bioconjugate Chem., 2008, 19, 1951-1959.
TABLE OF CONTENT (TOC) GRAPHIC:
Article_ChemRxiv.pdf (606.52 KiB)
view on ChemRxiv
download file
Supporting Information:
Rationally Designed Long-Wavelength Absorbing
Ru(II) Polypyridyl Complexes as Photosensitizers for
Photodynamic Therapy
Johannes Karges,† Franz Heinemann,†,‡ Marta Jakubaszek,†,¶ Federica Maschietto,§ Chloé
Subecz,† Mazzarine Dotou,† Olivier Blacque,‡ Mickaël Tharaud,$ Bruno Goud,¶ Emilio
Viñuelas Zahínos,⊥ Bernhard Spingler,‡,* Ilaria Ciofini,§,* and Gilles Gasser†,*
† Chimie ParisTech, PSL University, CNRS, Institute of Chemistry for Life and Health Sciences, Laboratory
for Inorganic Chemical Biology, 75005 Paris, France.
‡
Department of Chemistry, University of Zurich, Winterthurerstrasse 190, 8057, Zurich, Switzerland.
¶
Institut Curie, PSL University, CNRS UMR 144, 75005 Paris, France.
§
Chimie ParisTech, PSL University, CNRS, Institute of Chemistry for Life and Health Sciences, Theoretical
Chemistry and Modelling, 75005 Paris, France.
$
Université de Paris, Institut de physique du globe de Paris, CNRS, F-75005 Paris, France
⊥
Departamento de Química Orgánica e Inorgánica, Facultad de Ciencias, Universidad de Extremadura,
06071 Badajoz, Spain.
Table of Contents
Experimental Section _________________________________________________________________________ 1
Computational details _______________________________________________________________________________________________________ 1
Materials _____________________________________________________________________________________________________________________ 1
Instrumentation and methods ______________________________________________________________________________________________ 2
Synthesis _____________________________________________________________________________________________________________________ 2
X-ray crystallography _______________________________________________________________________________________________________ 6
Spectroscopic measurments ________________________________________________________________________________________________ 7
Lifetime measurments ______________________________________________________________________________________________________ 8
Luminescence quantum yield measurments ______________________________________________________________________________ 8
Singlet oxygen measurments _______________________________________________________________________________________________ 9
Stability in DMSO __________________________________________________________________________________________________________ 10
Stability in human plasma ________________________________________________________________________________________________ 10
Photostability ______________________________________________________________________________________________________________ 11
Distribution coefficient ____________________________________________________________________________________________________ 11
Cell culture _________________________________________________________________________________________________________________ 12
Cellular uptake _____________________________________________________________________________________________________________ 12
(Photo-)cytotoxicity _______________________________________________________________________________________________________ 12
Cellular localisation________________________________________________________________________________________________________ 13
Seahorse mito stress test __________________________________________________________________________________________________ 14
Seahorse glycolysis stress test ____________________________________________________________________________________________ 14
Generation of 3D HeLa MCTS _____________________________________________________________________________________________ 15
(Photo-)cytotoxcity in 3D HeLa MCTS ___________________________________________________________________________________ 15
Supporting Figures and Tables ____________________________________________________________ 16
Table S1. Cartesian coordinates of the optimized structure of complex 1. ___________________________________________ 16
Table S2. Cartesian coordinates of the optimized structure of complex 2. ___________________________________________ 17
Table S3. Cartesian coordinates of the optimized structure of complex 3. ___________________________________________ 18
Table S4. Cartesian coordinates of the optimized structure of complex 4. ___________________________________________ 20
Table S5. Cartesian coordinates of the optimized structure of complex 5. ___________________________________________ 21
Table S6. Cartesian coordinates of the optimized structure of complex 6. ___________________________________________ 23
Table S7. Cartesian coordinates of the optimized structure of complex 7. ____________________________________________ 25
Scheme S1. Synthesis of the desired complexes 1‑7. __________________________________________________________________ 28
Figure S1.
1H NMR spectrum of 1 in CD3CN, 500 MHz. ________________________________________________________________ 29
Figure S2. 13C NMR spectrum of 1 in CD3CN, 125 MHz. ________________________________________________________________ 29
Figure S3.
1H NMR spectrum of 2 in CD3CN, 400 MHz. ________________________________________________________________ 30
Figure S4. 13C NMR spectrum of 2 in CD3CN, 100 MHz. ________________________________________________________________ 30
Figure S5.
1H NMR spectrum of 3 in CD3CN, 500 MHz. ________________________________________________________________ 31
Figure S6. 13C NMR spectrum of 3 in CD3CN, 125 MHz. ________________________________________________________________ 31
Figure S7.
1H NMR spectrum of 4 in CD3CN, 400 MHz. ________________________________________________________________ 32
Figure S8. 13C NMR spectrum of 4 in CD3CN, 100 MHz. ________________________________________________________________ 32
Figure S9.
1H NMR spectrum of 5 in CD3CN, 400 MHz. ________________________________________________________________ 33
Figure S10. 13C NMR spectrum of 5 in CD3CN, 125 MHz. ________________________________________________________________ 33
Figure S11. 1H NMR spectrum of 6 in CD3CN, 400 MHz. ________________________________________________________________ 34
Figure S12. 13C NMR spectrum of 6 in CD3CN, 125 MHz. ________________________________________________________________ 34
Figure S13. 1H NMR spectrum of 7 in CD3CN, 500 MHz. ________________________________________________________________ 35
Figure S14. 13C NMR spectrum of 7 in CD3CN, 125 MHz. ________________________________________________________________ 35
Figure S15. The molecular structure of 1 ________________________________________________________________________________ 36
Figure S16. The molecular structure of 2.________________________________________________________________________________ 36
Figure S17. The molecular structure of 3.________________________________________________________________________________ 37
Table S8. Crystal data and structure refinement for of 1 and 2. ______________________________________________________ 38
Table S9. Crystal data and structure refinement for of 3. _____________________________________________________________ 39
Figure S18. Difference density plots calculated between ES and GS of 6 and 7. _____________________________________ 40
Table S10. Spectroscopic properties of complexes 1-7 in CH3CN at room temperature. ___________________________ 41
Figure S19. Measured UV/Vis spectra of the complexes 1‐7 in CH3CN. ______________________________________________ 42
Figure S20. Normalised emission spectra of the complexes 1‐7 in CH3CN. __________________________________________ 42
Figure S21. Lifetime spectra of the complex 1. __________________________________________________________________________ 43
Figure S12. Lifetime spectra of the complex 2. __________________________________________________________________________ 44
Figure S23. Lifetime spectra of the complex 3. __________________________________________________________________________ 45
Figure S24. Lifetime spectra of the complex 4. __________________________________________________________________________ 46
Figure S25. Lifetime spectra of the complex 5. __________________________________________________________________________ 47
Figure S26. Lifetime spectra of the complex 6. __________________________________________________________________________ 48
Figure S27. Lifetime spectra of the complex 7. __________________________________________________________________________ 49
Table S11. Singlet oxygen quantum yields of 1-7. _____________________________________________________________________ 50
Figure S28. 1H NMR spectrum of 1 in DMSO-d6 after prep. and 7 days. _______________________________________________ 50
Figure S29. 1H NMR spectrum of 2 in DMSO-d6 after prep. and 7 days. _______________________________________________ 51
Figure S30. 1H NMR spectrum of 3 in DMSO-d6 after prep. and 7 days. _______________________________________________ 51
Figure S31. 1H NMR spectrum of 4 in DMSO-d6 after prep. and 7 days. _______________________________________________ 52
Figure S32. 1H NMR spectrum of 5 in DMSO-d6 after prep., 1, 2 and 7 days. __________________________________________ 53
Figure S33. 1H NMR spectrum of 6 in DMSO-d6 after prep. and 7 days. _______________________________________________ 54
Figure S34. 1H NMR spectrum of 7 in DMSO-d6 after prep., 1, 2 and 7 days. __________________________________________ 55
Figure S35. HPLC chromatogram of Caffeine (internal standard) and 1 after 48 h incubation.______________________ 56
Figure S36. HPLC chromatogram of Caffeine (internal standard) and 2 after 48 h incubation.______________________ 56
Figure S37. HPLC chromatogram of Caffeine (internal standard) and 3 after 48 h incubation.______________________ 56
Figure S38. HPLC chromatogram of Caffeine (internal standard) and 4 after 48 h incubation.______________________ 57
Figure S39. HPLC chromatogram of Caffeine (internal standard) and 5 after 0, 4, 12, 24 and 48 incubation. ______ 57
Figure S40. HPLC chromatogram of Caffeine (internal standard) and 6 after 48 h incubation.______________________ 58
Figure S41. HPLC chromatogram of Caffeine (internal standard) and 7 after 0, 4, 12, 24 and 48 incubation. ______ 58
Figure S42. Temporal change of the UV/Vis spectra of [Ru(bipy)3]Cl2 by irradiation at 450 nm in CH3CN. ________ 59
Figure S43. Temporal change of the UV/Vis spectra of complex 1 by irradiation at 450 nm in CH3CN. _____________ 59
Figure S44. Temporal change of the UV/Vis spectra of complex 2 by irradiation at 450 nm in CH3CN. _____________ 60
Figure S445. Temporal change of the UV/Vis spectra of complex 3 by irradiation at 450 nm in CH3CN. ___________ 60
Figure S46. Temporal change of the UV/Vis spectra of complex 4 by irradiation at 450 nm in CH3CN. _____________ 61
Figure S47. Temporal change of the UV/Vis spectra of complex 5 by irradiation at 450 nm in CH3CN. _____________ 61
Figure S48. Temporal change of the UV/Vis spectra of complex 6 by irradiation at 450 nm in CH3CN. _____________ 62
Figure S49. Temporal change of the UV/Vis spectra of complex 7 by irradiation at 450 nm in CH3CN. _____________ 62
Figure S50. Temporal change of the UV/Vis spectra of Protoporphyrin IX by irradiation at 450 nm in CH3CN. ___ 63
Table S12. Distribution coefficients of 1-7. ______________________________________________________________________________ 63
Figure S51. Comparison of the cellular uptake of complexes 1–7. _____________________________________________________ 64
Figure S52. Time-dependent accumulation of complex 6 in HeLa cell line. ___________________________________________ 64
Figure S53. Plate arrangement for Seahorse Mito Stress and Glycolysis Stress experiments. _______________________ 65
Figure S54. Oxygen consumption rates and different respiration parameters in CT-26 cells alone or after treatment
with various test compounds. ____________________________________________________________________________________________ 65
Figure S55. Extracellular acidification rates and different glycolysis parameters in CT-26 cells alone or after
treatment with various test compounds. ________________________________________________________________________________ 66
References ____________________________________________________________________________________ 67
EXPERIMENTAL SECTION
Computational Details
All calculations were performed using the Gaussian 091 software package. All calculations
were performed using the Los Alamos LANL22 effective core potential and the
corresponding triple-zeta basis set for the Ruthenium atom, with all other atoms treated
with the Pople double-zeta basis set with a single set of polarisation and diffuse functions
on non-hydrogen atoms (6-31+G(d)3, 4. Solvent effects (here acetonitrile) were included
using an implicit model (i.e. the Polarizable Continuum Model – PCM5. All geometry
optimisations were performed using density functional theory (DFT) with the global
hybrid B3LYP6 exchange-correlation functional and all minima on the potential energy
surface were verified via a calculation of vibrational frequencies, ensuring no imaginary
frequencies were present. Excited states of all compounds (as shown in Scheme 1) were
probed using time dependent density functional theory (TD-DFT7) combined with the
same exchange correlation functional and basis set. All transitions (singlet-singlet) were
calculated vertically with respect to the singlet ground state. Absorption spectra were
simulated by convolution with Gaussian functions with a full width at half maximum
(FWHM) of 0.3 eV. In order to characterize the nature of the lowest energy states of
interest (see discussion), relaxed excited state density was also computed together with
the corresponding associated charge transfer distance (DCT)8. In brief the DCT index
provides a measure of the spatial extent of a given transition and yields a coherent
representation of the charge rearrangements occurring upon generation of the exciton
based on the ground and excited states density distributions. Details on how to calculate
the DCT index are reported in refs.8, 9
Materials
All chemicals were obtained from commercial sources and were used without further
purification. Solvents were dried over molecular sieves if necessary. The Ru(II) complexes
dichlorobis(1,10-phenanthroline)ruthenium(II) [RuCl2(phen)2] and dichlorobis(4,7Diphenyl-1,10-phenanthroline)ruthenium(II) [RuCl2(bphen)2] were synthesised as
previously published using the respective ligands.10 The substituted bipyridine ligands
2,2’-bipyridine-4,4’-dicarbonitrile11 and (E,E’)-4,4’-bis(N,N-dimethylaminovinyl)-2,2’bipyridine12 were synthesised as previously reported.
1
Instrumentation and methods
1H and 13C NMR spectra were recorded on a Bruker 400 MHz or Bruker 500 MHz NMR
spectrometer. Chemical shifts (δ) are reported in parts per million (ppm) referenced to
tetramethylsilane (δ 0.00) ppm using the residual proton solvent peaks as internal
standards. Coupling constants (J) are reported in Hertz (Hz) and the multiplicity is
abbreviated as follows: s (singlet), d (doublet), dd (doublet of doublet), t (triplet), m
(multiplet). ESI mass spectra were recorded on a Bruker ESQUIRE-LC quadrupole ion trap
spectrometer. Elemental microanalyses were performed on a LecoCHNS-932 elemental
analyser or a Thermo Flash 2000 elemental analyser. Inductively coupled plasma mass
spectrometry (ICP-MS) experiments were carried out on HR-ICP-MS Element II (Thermo
Scientific) apparatus.
Synthesis
Proton and carbon NMR spectra can be found in the supplemental information (Figures
S1-14).
(1)
[Ru(bpy)(phen)2](PF6)2
(2,2’‐Bipyridine)bis(1,10‐phenanthroline)ruthenium(II)hexafluorophosphate
The synthesis of [Ru(bipy)(phen)2](PF6)2 is already published13 but in this study another
synthetic route was employed. RuCl2(phen)2 (150 mg, 0.28 mmol, 1.0 equiv.) and 2,2′bipyridine (48 mg, 0.31 mmol, 1.1 equiv.) were dissolved in 8 mL MeOH and refluxed for
18 h under N2 atmosphere. After this time, the volume of the brown mixture was reduced
to 1/4. A saturated, aq. NH4PF6 solution was added and the resulting precipitate was
collected by vacuum filtration and washed with H2O (50 mL) and Et2O (50 mL). The
product was dried in high vacuum. Yield: 51%. 1H NMR (500 MHz, CD3CN) δ = 8.65 (dd,
2H, J = 8.3, 1.3 Hz), 8.55 (dd, 2H, J = 8.2, 1.3 Hz), 8.52 (d, 2H, J = 8.3 Hz), 8.26 (d, 2H, J = 8.9
Hz), 8.23 (d, 2H, J = 8.9 Hz), 8.20 (d, 2H, J = 5.2 Hz), 8.03 (td, 2H, J = 8.1, 1.4 Hz), 7.88 (dd,
2H, J = 5.3, 1.2 Hz), 7.79 (dd, 2H, J = 8.3, 5.2 Hz), 7.67 (d, 2H, J = 5.6 Hz), 7.56 (dd, 2H, J =
8.2, 5.3 Hz), 7.27 (ddd, 2H, J = 7.3, 5.6, 1.3 Hz); 13C NMR (125 MHz, CD3CN) δ = 158.3, 153.8,
153.6, 153.2, 148.8, 148.6, 138.7, 137.8, 137.7, 132.0, 132.0, 129.0, 129.0, 128.3, 127.0,
126.8, 125.1; HRMS (ESI⁺ m/z): Calcd. for [C34H24F12N6P2Ru-2PF6]2+: 309.05478, Found:
309.05475, Calcd. for [C34H24F12N6P2Ru-PF6]+: 763.07423, Found: 763.07434; Anal. Calcd.
for C34H24F12N6P2Ru: C, 44.99; H, 2.67; N, 9.26, Found: C, 44.69; H, 2.61; N 9.25.
2
(2)
[Ru(dmb)(phen)2](PF6)2
(4,4′‐Dimethyl‐2,2′‐bipyridine)bis(1,10‐phenanthroline)ruthenium(II)
hexafluorophosphate
The synthesis of [Ru(dmb)(phen)2](PF6)2 is already published14 but in this study another
synthetic route was employed. RuCl2(phen)2 (150 mg, 0.28 mmol, 1.0 equiv.) and 4,4’dimethyl-2,2’-bipyridine (57 mg, 0.31 mmol, 1.1 equiv.) were dissolved in a 1:1 mixture of
H2O/EtOH (7 mL) and were refluxed for 18 h under N2 atmosphere. The solvent was
evaporated to one third of the volume and a saturated, aq. NH4PF6 solution was added.
The resulting precipitate was collected by vacuum filtration and washed with H2O
(50 mL) and Et2O (50 mL). The product was dried in high vacuum. Yield: 97%. 1H NMR
(400 MHz, CD3CN) δ = 8.64 (dd, 2H, J = 8.3, 1.3 Hz), 8.53 (dd, 2H, J = 8.3, 1.3 Hz), 8.37 (s,
2H), 8.25 (d, 2H, J = 8.9 Hz), 8.22 (d, 2H, J = 8.9 Hz) 8.20 (dd, J = 5.3, 1.3 Hz), 7.88 (dd, 2H,
J = 5.3, 1.3 Hz), 7.79 (dd, 2H, J = 8.3, 5.3 Hz), 7.54 (dd, 2H, J = 8.2, 5.3 Hz), 7.47 (d, 2H, J =
5.8 Hz), 7.10 (dd, 2H, J = 5.8, 1.2 Hz), 2.51 (s, 6H); 13C NMR (100 MHz, CD3CN) δ = 157.8,
153.6, 153.6, 152.2, 151.3, 148.9, 148.7, 137.6, 137.5, 131.9, 131.9, 129.0, 129.0, 129.0,
126.9, 126.8, 125.8, 21.2; HRMS (ESI⁺ m/z): Calcd. for [C36H28F12N6P2Ru-2PF6]2+:
323.07040, Found: 323.07040; Anal. Calcd. for C36H28F12N6P2Ru+2H2O: C, 44.50; H, 3.32;
N, 8.65, Found: C, 44.43; H, 3.08; N, 8.52.
(3)
[Ru(Br‐bpy)(phen)2](PF6)2
(4,4′‐Dibromo‐2,2′‐bipyridine)bis(1,10‐phenanthroline)ruthenium(II)
hexafluorophosphate
RuCl2(phen)2 (150 mg, 0.28 mmol, 1.0 equiv.) and 4,4’-Dibromo-2,2’-bipyridine (105 mg,
0.34 mmol, 1.2 equiv.) were dissolved in a 1:1 mixture of H2O/EtOH (40 mL) and were
refluxed for 18 h under N2 atmosphere. The solvent was evaporated and the residue
redissolved in 5 mL of H2O. A saturated, aq. NH4PF6 solution was added and the resulting
precipitate was collected by vacuum filtration. The solid was washed with H2O (50 mL)
and Et2O (50 mL). The product was isolated by column chromatography on silica gel with
an CH3CN/aq. KNO3 (0.4 M) solution (10:1). The fractions containing the product were
united and the solvent was removed. The residue was dissolved in CH3CN and undissolved
KNO3 was removed by filtration. The solvent was removed and the product was dissolved
in H2O (50 mL). Upon addition of NH4PF6 the product precipitated as a PF6 salt. The solid
3
was obtained by filtration and was washed with H2O (50 mL) and Et2O (50 mL). The
product was dried in high vacuum. Yield: 78%. 1H NMR (500 MHz, CD3CN) δ = 8.76 (2H,
d, J = 2.0 Hz), 8.68 (2H, dd, J = 8.3, 1.3 Hz), 8.55 (2H, dd, J = 8.3, 1.3 Hz), 8.27 (2H, d, J = 8.9
Hz), 8.25 (2H, dd, J = 5.3, 1.3 Hz), 8.22 (2H, d, J = 8.9 Hz), 7.84 (2H, dd, J = 5.3, 1.3 Hz), 7.81
(2H, dd, J = 8.3 , 5.2 Hz), 7.55 (2H, dd, J = 8.3, 5.3 Hz), 7.50 (2H, d, J = 6.1 Hz), 7.47 (2H, dd,
J = 6.1, 2.0 Hz). 13C NMR (125 MHz, CD3CN) δ = 158.3, 154.0, 153.9, 153.6, 148.7, 148.4,
138.0, 137.9, 134.7, 132.0, 132.0, 131.7, 129.1, 129.0, 129.0, 127.0, 126.9. HR-MS (ESI⁺
m/z): Calcd. [M-2PF₆]²⁺: 386. 96526; found: 386. 96576. Anal. (%): Calcd. for
(C34H22Br2F12N6P2Ru): C 38.33, H 2.08, N 7.89; found. C 38.62, H 2.01, N 7.78.
(4)
[Ru(CONH2‐bpy)(phen)2](PF6)2
(2,2’‐bipyridine‐4,4’‐carboxamide)bis(1,10‐phenanthroline)ruthenium(II)
hexafluorophosphate
RuCl2(phen)2 (150 mg, 0.28 mmol, 1.0 equiv.) and 2,2’-Bipyridine-4,4’-dicarbonitrile
(64 mg, 0.31 mmol, 1.1 equiv.) were dissolved in a 1:1 mixture of H2O/EtOH (30 mL) and
were refluxed for 18 h under N2 atmosphere. The solvent was evaporated and the residue
redissolved in 5 mL of H2O. A saturated, aq. NH4PF6 solution was added and the resulting
precipitate was collected by vacuum filtration. The solid was washed with H2O (50 mL)
and Et2O (50 mL). The product was purified by column chromatography on silica gel with
an CH3CN /aq. KNO3 (0.4 M) solution (10:1). The fractions containing the product were
united and the solvent was removed. The residue was dissolved in CH3CN and undissolved
KNO3 was removed by filtration. The solvent was removed again and the product was
dissolved in H2O (50 mL). Upon addition of NH4PF6 the product precipitated as a PF6 salt.
The solid was obtained by filtration and was washed with H2O (50 mL) and Et2O (50 mL).
The product was dried in high vacuum. Yield: 16%. 1H NMR (400 MHz, CD3CN) δ = 8.97
(2H, s), 8.67 (2H, d, J = 8.3 Hz), 8.58 (2H, d, J = 8.3 Hz), 8.30-8.22 (4H, m), 8.18 (2H, d, J =
5.2 Hz), 7.87-7.84 (4H, m), 7.79 (2H, dd, J = 8.3, 5.2 Hz), 7.61-.7.57 (4H, m), 7.25 (2H, s),
6.48 (2H, s). 13C NMR (100 MHz, CD3CN) δ = 165.7, 158.8, 154.0, 153.9, 153.5, 148.6, 148.3,
143.0, 138.2, 138.0, 132.1, 132.0, 129.1, 129.0, 127.0, 127.0, 126.0, 123.1. HR-MS (ESI⁺
m/z): Calcd. [M-2PF₆]²⁺ : 352.06056; found: 352.06063. Anal. (%): Calcd. for
(C36H26F12N8O2P2Ru): C 43.52, H 2.64, N 11.28; found. C 43.33, H 2.47, N 11.15.
4
(5)
[Ru(Me2Nvin‐bpy)(phen)2](PF6)2
((E,E’)‐4,4’‐Bis(N,N’‐dimethylaminovinyl)‐2,2’‐bipyridine)bis(1,10‐
phenanthroline) ruthenium(II) hexafluorophosphate
[Ru(dmb)(phen)2](PF6)2 (2) (100 mg, 0.11 mmol, 1.0 equiv.) was dissolved in dry DMF
(1.5 mL) and tert-butoxy bis(dimethylamino)methane (0.2 mL, 0.97 mmol, 8.8 equiv.)
was added. The mixture was heated at 140 °C for 16 h under N2 atmosphere. The solution
was cooled down and an aq. solution of NH4PF6 was added. The resulting precipitate was
collected by vacuum filtration and the solid was washed with H2O (50 mL) and Et2O
(50 mL). The product was isolated via fractionated precipitation from CH3CN by adding
dropwise Et2O and afterwards dried in high vacuum. Yield: 41%. 1H NMR (400 MHz,
CD3CN) δ = 8.61 (2H, dd, J = 8.3, 1.3 Hz), 8.48 (2H, dd, J = 8.3, 1.3 Hz), 8.38 (2H, dd, J = 5.3,
1.3 Hz), 8.24 (2H, d, J = 8.9 Hz), 8.19 (2H, J = 9.0 Hz), 8.08 (2H, d, J = 2.2 Hz), 7.87 (2H, dd,
J = 5.3, 1.3 Hz), 7.82 (2H, dd, J = 8.2 Hz, 5.3 Hz), 7.52 (2H, dd, J = 8.2 Hz, 5.3 Hz), 7.51 (2H,
d, J = 13.3 Hz), 6.99 (2H, d, J = 6.2 Hz), 6.77 (2H, dd, J = 6.2, 2.1 Hz), 5.08 (2H, d, J = 13.4
Hz), 2.94 (12H, s). 13C NMR (100 MHz, CD3CN) δ = 157.6, 153.5, 153.5, 151.6, 150.6, 149.2,
149.1, 147.8, 137.0, 137.0, 131.9, 131.9, 129.0, 129.0, 126.9, 126.7, 120.3, 117.1, 92.9,
40.1. HR-MS (ESI⁺ m/z): Calcd. [M-2PF₆]²⁺: 378.11260; found: 378.11289. Anal. (%):
Calcd. for (C42H38F12N8P2Ru): C 48.24, H 3.66, N 10.71; found: C 47.97, H 3.59, N 10.76.
(6)
[Ru(dmb)(bphen)2](PF6)2 <
(4,4′‐Dimethyl‐2,2′‐bipyridine)bis(4,7‐diphenyl‐1,10‐
phenanthroline)ruthenium(II) hexafluorophosphate
The synthesis of [Ru(dmb)(bphen)2](PF6)2 is already published15 but in this study
another synthetic route was employed. RuCl2(bphen)2 (200 mg, 0.24 mmol, 1.0 equiv.)
and 4,4’-Dimethyl-2,2’-bipyridine (53 mg, 0.29 mmol, 1.2 equiv.) were dissolved in a 1:1
mixture of H2O/EtOH (10 mL) and were refluxed for 18 h under N2 atmosphere. The
solvent was evaporated and the residue redissolved in 10 mL of H2O. A saturated, aq.
NH4PF6 solution was added and the suspension was sonicated. 60 mL of H2O were added
and the resulting precipitate was collected by vacuum filtration. The solid was washed
with H2O (50 mL) and Et2O (50 mL). The product was dried in high vacuum. Yield: 93%.
1H NMR (400 MHz, CD3CN) δ = 8.44 (2H, s), 8.29 (2H, d, J = 5.5 Hz), 8.22-8.16 (m, 4H), 8.10
(2H, d, J = 5.5 Hz), 7.75 (2H, d, J = 5.5 Hz), 7.72 – 7.53 (24H, m), 7.21 (2H, d, J = 5.8, J = 1.7
5
Hz), 2.56 (6H, s). 13C NMR (125 MHz, CD3CN) δ = 157.7, 153.1, 152.9, 152.2, 151.4, 149.9,
149.8, 149.5, 149.4, 136.7, 136.7, 130.8, 130.7, 130.7, 130.6, 130.6, 130.1, 130.1, 130.1,
129.9, 129.9, 129.1, 127.1, 127.0, 127.0, 126.9, 125.8, 21.3. HR-MS (ESI⁺ m/z): Calcd. [M2PF₆]²⁺: 475.13300; found: 475.13388. Anal. (%): Calcd. (C60H44F12N6P2Ru)·(H2O)2 : C
56.47, H 3.79, N 6.59; found: C 56.46, H 3.85, N 6.11.
(7)
[Ru(Me2Nvin‐bipy)(bphen)2](PF6)2
((E,E’)‐4,4’‐Bis(N,N’‐dimethylaminovinyl)‐2,2’‐bipyridine)bis(4,7‐diphenyl‐1,10‐
phenanthroline)ruthenium(II) hexafluorophosphate
[Ru(dmb)(bphen)2](PF6)2 (7) (150 mg, 0.12 mmol, 1.0 equiv.) was dissolved in dry DMF
(1.5 mL) and tert-butoxy bis(dimethylamino)methane (0.3 mL, 1.45 mmol, 12.1 equiv.)
was added. The mixture was heated at 140 °C for 18 h under N2 atmosphere. After this
time, more tert-butoxy bis(dimethylamino)methane (0.4 mL, 1.94 mmol, 16.2 equiv.) was
added the mixture was heated at 145 °C for 72 h under N2 atmosphere. The solution was
cooled down and an aq. solution of NH4PF6 was added. The resulting precipitate was
collected by vacuum filtration and the solid was washed with H2O (50 mL) and Et2O
(50 mL). The product was isolated via fractionated precipitation from CH3CN by adding
dropwise Et2O and afterwards dried in high vacuum. Yield: 67%. 1H NMR (500 MHz,
CD3CN) δ = 8.48 (2H, d, J = 5.5 Hz), 8.20 (2H, d, J = 9.4 Hz), 8.16 8.20 (2H, d, J = 9.5 Hz),
8.13 (2H, d, J = 2.11 Hz), 8.09 (2H, d, J = 5.5 Hz), 7.80 (2H, d, J = 5.5 Hz), 7.69 – 7.52 (22H,
m), 7.21 (2H, d, J = 6.2 Hz), 6.87 (2H, dd, J = 6.3, 2.0 Hz), 5.14 (2H, d, J = 13.4 Hz), 2.96 (12H,
s). 13C NMR (125 MHz, CD3CN) δ = 157.4, 152.9, 152.7, 151.5, 150.6, 149.7, 149.6, 149.2,
149.2, 149.2, 149.2, 149.2, 147.7, 136.9, 136.8, 130.8, 130.7, 130.7, 130.5, 130.5,
130.1,130.0, 130.0, 129.7, 129.7, 127.1, 126.9, 126.8, 126.8, 120.2, 117.0, 92.7, 40.7. HRMS (ESI⁺ m/z): Calcd. [M‑2PF₆]²⁺: 530.17520; found: 530.17584. Anal. (%): Calcd. for
(C66H54F12N8P2Ru)·(H2O)0.5: C 58.32, H 4.08, N 8.24; found: C 58.17, H 3.83, N 8.66.
X‐ray crystallography
Single crystal X-ray diffraction data were collected at 183(1) K on a Rigaku OD SuperNova
(Atlas CCD detector) diffractometer for 1 and 2 and on a Rigaku OD Xcalibur (Ruby CCD
detector) diffractometer for 3 equipped with Oxford liquid-nitrogen Cryostream coolers.
A single wavelength X-ray source from a micro-focus sealed X-ray tube was used with the
Cu Kα radiation (λ = 1.54184 Å) for 1 and 2 and with the Mo Kα radiation (λ = 0.71073 Å)
6
for 3. The selected single crystals were mounted using polybutene oil on a flexible loop
fixed on a goniometer head and transferred to the diffractometer. Pre-experiments, data
collections, data reductions and analytical absorption corrections16 were performed with
the program suite CrysAlisPro.17 Using Olex2,18 the structures were solved with the
SHELXT19 small molecule structure solution program and refined with the SHELXL2018/1
program package20 by full-matrix least-squares minimization on F2. The crystal data
collections and structure refinement parameters are gathered in Tables S1 and S2. CCDC
1969709 (for 1), 1969708 (for 2), and 1969710 (for 3) contain the supplementary
crystallographic data for these compounds, and can be obtained free of charge from the
Cambridge Crystallographic Data Centre via www.ccdc.cam.ac.uk/data_request/cif.
In the crystal structure of 1, solvent molecules of acetonitrile cocrystallized with the main
species, one molecule could easily be introduced in the model and freely refined but a
second one was observed badly disordered in the asymmetric unit. Consequently, the
PLATON SQUEEZE tool21 was used to take the solvent contribution into account to the
calculated structure factors: a total number of 92 electrons were found in the P1 unit cell
that were considered as 4 solvent molecules of acetonitrile (one per asymmetric unit). In
the crystal structure of 2, the PF6 counterions occupy three different positions in the
asymmetric unit: one general position and two special positions (centers of inversions).
The F atoms of one PF6 are disordered over two sets of positions. Solvent molecules of
tetrahydropyran cocrystallized with the main species. They occupy two general positions
and are disordered over two sets of positions. Solvent molecules of water are also present
in the crystal. The non H atoms of the solvent molecules were isotropically refined. In the
crystal structure of 3, the PF6 counterions occupy two different positions in the
asymmetric unit and in both independent molecules the F atoms are disordered over two
sets of positions. There are also two solvent molecules of acetonitrile in the asymmetric
unit, one is fully disordered over two sets of positions.
Spectroscopic measurements
The absorption of the samples in cuvettes has been measured with a Lambda 800 UV/VIS
Spectrometer (PerkinElmer Instruments) and in 96 well plates with a SpectraMax M2
Spectrometer (Molecular Devices) or with a Varian Cary 8454” UV/Visible
spectrophotometer and quartz cuvettes (width 1 cm) at c = 7.5 µM The emission was
measured by irradiation of the sample in fluorescence quartz cuvettes (width 1 cm) using
7
a NT342B Nd-YAG pumped optical parametric oscillator (Ekspla) at 355 nm.
Luminescence was focused and collected at right angle to the excitation pathway and
directed to a Princeton Instruments Acton SP-2300i monochromator. As a detector a XPIMax 4 CCD camera (Princeton Instruments) has been used.
Lifetime measurements
For the determination of the lifetimes, the samples were prepared in an air saturated and
in a degassed CH3CN solution with an absorbance of 0.1 at 355 nm. This solution was
irradiated in fluorescence quartz cuvettes (width 1 cm) using a NT342B Nd-YAG pumped
optical parametric oscillator (Ekspla) at 355 nm. The emission signal was focused and
collected at right angle to the excitation pathway and directed to a Princeton Instruments
Acton SP-2300i monochromator. As a detector a R928 photomultiplier tube (Hamamatsu)
was used.
Luminescence quantum yield measurements
For the determination of the luminescence quantum yield, the samples were prepared in
an CH3CN solution with an absorbance of 0.1 at 355 nm. This solution was irradiated in
fluorescence quartz cuvettes (width 1 cm) using a NT342B OPO pulse laser Nd-YAG
pumped optical parametric oscillator (Ekspla) at 355 nm. The emission signal was
focused and collected at right angle to the excitation pathway and directed to a Princeton
Instruments Acton SP-2300i monochromator. As detector a XPI-Max 4 CCD camera
(Princeton Instruments) was used. The luminescence quantum yields were determined
by comparison with the reference [Ru(bipy)3]Cl2 in CH3CN (Φem = 0.059)22 applying the
following formula :
𝛷
,
𝛷
∗
,
F
F
F
∗
1
I
I
∗
n
n
10
Φem = luminescence quantum yield, F = fraction of light absorbed, I = integrated emission
intensities, n = refractive index, A = absorbance of the sample at irradiation wavelength
8
Singlet oxygen measurements
-
direct evaluation
The samples were prepared in an air saturated CH3CN or D2O solution with an absorbance
of 0.2 at 450 nm. This solution was irradiated in fluorescence quartz cuvettes (width
1 cm) using a mounted M450LP1 LED (Thorlabs) whose irradiation, centred at 450 nm,
has been focused with aspheric condenser lenses. The intensity of the irradiation has been
varied using a T-Cube LED Driver (Thorlabs) and measured with an optical power and
energy meter. The emission signal was focused and collected at right angle to the
excitation pathway and directed to a Princeton Instruments Acton SP-2300i
monochromator. A longpass glass filter was placed in front of the monochromator
entrance slit to cut off light at wavelengths shorter than 850 nm. The slits for detection
were fully open. As a detector an EO-817L IR-sensitive liquid nitrogen cooled germanium
diode detector (North Coast Scientific Corp.) has been used. The singlet oxygen
phosphorescence at 1270 nm was measured by recording spectra from 1100 to 1400 nm.
For the data analysis, the singlet oxygen luminescence peaks at different irradiation
intensities were integrated. The resulting areas were plotted against the percentage of the
irradiation intensity and the slope of the linear regression calculated. The absorbance of
the sample was corrected with an absorbance correction factor. As reference for the
measurement in an CH3CN solution phenalenone (Φphenaleone = 0.95)23 and for the
measurement in a D2O solution [Ru(bipy)3]Cl2 (ΦRu(bipy)₃Cl₂ = 0.22)24 was used and the
singlet oxygen quantum yields were calculated using the following formula:
𝛷
S
S
𝛷
I
I
1
I
I
10
Φ = singlet oxygen quantum yield, S = slope of the linear regression of the plot of the areas
of the singlet oxygen luminescence peaks against the irradiation intensity, I = absorbance
correction factor, I0 = light intensity of the irradiation source, A = absorbance of the
sample at irradiation wavelength.
-
indirect evaluation
For the measurement in CH3CN: The samples were prepared in an air-saturated CH3CN
solution containing the complex with an absorbance of 0.1 at the irradiation wavelength,
9
N,N-dimethyl-4-nitrosoaniline aniline (RNO, 24 µM) and imidazole (12 mM). For the
measurement in PBS buffer: The samples were prepared in an air-saturated PBS solution
containing the complex with an absorbance of 0.1 at the irradiation wavelength, N,Ndimethyl-4-nitrosoaniline aniline (RNO, 20 µM) and histidine (10 mM). The samples were
irradiated on 96 well plates with an Atlas Photonics LUMOS BIO irradiator for different
times. The absorbance of the samples was measured during these time intervals with a
SpectraMax M2 Microplate Reader (Molecular Devices). The difference in absorbance (A₀A) at 420 nm for the CH3CN solution or at 440 nm a PBS buffer solution was calculated
and plotted against the irradiation times. From the plot the slope of the linear regression
was calculated as well as the absorbance correction factor determined. The singlet oxygen
quantum yields were calculated using the same formulas as used for the direct evaluation.
Stability in DMSO
The stability of the complexes in DMSO was determined by 1H-NMR spectroscopy. The
complexes were dissolved in 0.7 mL DMSO-d6 [2 mg/mL] and the filled tube stored at
room temperature in the dark. A spectrum was measured directly after preparing the
solutions and after 1, 2 and 7 days.
Stability in human plasma
The stability of the complexes was evaluated with Caffeine as an internal standard, which
has already shown to be suitable for these experiments.25 The pooled human plasma was
obtained from Biowest and caffeine from TCI Chemicals. Stock Solutions of the
compounds (40 µM) and caffeine (40 or 20 µM) were prepared in DMSO. One aliquot of
the solutions was added to 975 µL of human plasma to a total volume of 1000 µL. Final
concentrations of the compounds of 0.5 µM and caffeine of 0.5 or 0.25 µM were achieved.
The resulting solution was incubated for 4 h, 12 h, 24 h and 48 h at 37 °C with continuous
gentle shaking (ca. 300 rpm). The reaction was stopped after the incubation time by
addition of 2 mL of methanol. The mixture was centrifuged for 45 min at 650 g at 4 °C. The
methanolic solution was filtered through a 0.2 µm membrane filter. The solvent was
evaporated under reduced pressure and the residue was dissolved in 1:1 (v/v) CH3CN/
H2O 0.1 % TFA solution. The solution was filtered through a 0.2 µm membrane filter and
analysed using a HPLC System. For analytic HPLC the following system has been used: 2 x
Agilent G1361 1260 Prep Pump system with Agilent G7115A 1260 DAD WR Detector
10
equipped with an Agilent Pursuit XRs 5C18 (100 Å, C18 5 µm 250 × 4.6 mm) Column and
an Agilent G1364B 1260-FC fraction collector. The flow rate was 1 mL/min and the
chromatogram was detected at 250 nm. In this study, the chromatograms were recorded
using two different methods. Method M1: The solvents (HPLC grade) were millipore
water (0.1 % TFA, solvent A) and acetonitrile (solvent B). 0-3 minutes: isocratic 95 % A
(5 % B); 3-17 minutes: linear gradient from 95 % A (5 % B) to 0 % A (100 % B); 17-23
minutes: isocratic 0 % A (100% B). Method M2: The solvents (HPLC grade) were millipore
water (0.1 % TFA, solvent A) and acetonitrile (0.1 % TFA, solvent B). 0-3 minutes:
isocratic 95 % A (5 % B); 3-17 minutes: linear gradient from 95 % A (5 % B) to 0 % A
(100 % B); 17-23 minutes: isocratic 0 % A (100 % B).
Photostability
The samples were prepared in an air saturated CH3CN solution with an absorbance of
about 0.5 at 450 nm. To measure the photostability, the samples were irradiated at
450 nm in 96 well plates with an Atlas Photonics LUMOS BIO irradiator during time
intervals from 0-10 min. The absorbance spectrum from 350-700 nm was recorded with
a SpectraMax M2 Microplate Reader (Molecular Devices) after each time interval and
compared. As a positive control [Ru(bipy)3]Cl2 and as a negative control Protoporphyrin
IX has been used.
Distribution coefficient
The lipophilicity of a complex was determined by measuring its distribution coefficient
between the PBS and Octanol phase by using the “shake-flask” method. For this technique,
the used phases were previously saturated in each other. The complex was dissolved in
the phase (A) with its major presence with an absorbance of about 0.5 at 450 nm. This
solution was then mixed with an equal volume of the other phase (B) at 80 rpm for 8 h
with an Invitrogen sample mixer and then equilibrated overnight. The phase A was then
carefully separated from phase B. The amount of the complex before and after the sample
mixing was determined by UV/Vis spectroscopy at 450 nm using a SpectraMax M2
Microplate Reader (Molecular Devices). The evaluation of the complexes was repeated
three times and the ratio between the organic and aqueous phase calculated.
11
Cell culture
HeLa and CT-26 cell lines were cultured in DMEM media (Gibco, Life Technologies, USA)
supplemented with 10 % of fetal calf serum (Gibco). U87 and U373 cell lines were
cultured in MEM media with addition of 1 % of MEM NEAA (non-essential amino acids)
(Gibco) and 10 % of fetal calf serum. RPE-1 cells were cultured in DMEM/F-12 (Gibco)
supplemented with 10 % of fetal calf serum. All cell lines were complemented with
100 U/mL penicillin-streptomycin mixture (Gibco) and maintained in humidified
atmosphere at 37 °C and 5 % of CO2.
Cellular uptake
The cellular uptake of the complex was investigated by the determination of the Ru
content inside the cells. The complex with a final concentration of 25 μM (2% DMSO, v%)
was incubated for 4 h at 37 °C on a cell culture dish with a density of ca. 5 . 106 cells in 10
mL of media. After this time, the media was removed and the cells were washed with cell
media. The cells were trypsinised, harvested, centrifuged and resuspended. The number
of cells on each dish was accurately counted. Each sample was the digested using a 60%
HNO3 solution for three days. The acid was removed and the residue dissolved in 2% HCl
in water. The Ru content was determined using an ICP-MS apparatus and comparing the
results with the Ru references. The Ru content was then associated with the number of
cells.
(Photo‐)cytotoxicity
Dark and light cytotoxicity of the the Ru(II) complexes was assesed by fluorometric cell
viability assay using resazurin (ACROS Organics). For dark and light cytotoxicity, cells
were seeded in triplicates in 96 well plates at a density of 4000 cells per well in 100 µL,
24 h prior to treatment. The medium was then replaced with increasing concentration of
the tested complexes and cells were incubated for 4 h. Medium was then replaced for
fresh complete medium. Cells used for light cytotoxicity experiment were exposed to:
480 nm light for 10 min, 510 nm for 40 min, 540 for 60 min or 595 nm for 120 min in a
96-well plate using a LUMOS-BIO photoreactor (Atlas Photonics). Each well was
individually illuminated with a LED at constant current. After irradiation cells were kept
for another 44 h in the incubator and the medium was replaced by fresh complete
medium containing resazurin (0.2 mg mL-1 final concentration). After 4 h incubation at
12
37 °C, the fluorescence signal of the resorufin product was read by SpectraMax M5
mictroplate reader (ex: 540 nm em: 590 nm). IC50 values were calculated using GraphPad
Prism software.
Cellular localisation
HeLa cells were grown on the 12 mm Menzel–Gläser coverslips in 2 ml of complete
medium at a density of 1.3 x 105 cells per ml. Cells were then treated with the compounds
(IC50 concentration in the dark) for 2 h, with NucBlue (2 drops per 1 ml of media) for the
last 25 min and with 100 nm Mitotracker Green FM for the last 15 min. HeLa cells were
then fixed with paraformaldehyde solution in PBS (4%) and mounted on glass slides using
Prolong Glass Antifade Mountant. Leica SP8 confocal microscope was used to analyse the
samples. Ru compounds were excited at 488 nm and emission above 650nm was
recorded.
Time dependent localisation of complex 6
HeLa cells were grown on the 12 mm Menzel–Gläser coverslips in 2 ml of complete
medium at a density of 1.3 x 105 cells per ml. Cells were then treated with the complex 6
(14 µM) for 5 min, 10 min, 30 min and 2h. Cells were then co-stained with NucBlue (2
drops per 1 ml of media) for the last 25 min and with 100 nm Mitotracker Green FM for
the last 15 min. HeLa cells were then fixed and images were taken on Leica SP8 confocal
microscope.
Indirect Immunofluorescence
HeLa cells were grown on the 12 mm Menzel–Gläser coverslips in 2 ml of complete
medium at a density of 1.3 x 105 cells per ml. Cells were then treated with the complex 6
(14 µM) for 2h. Cells were co-stained with NucBlue (2 drops per 1 ml of media) for the
last 25 min and with 100 nm Mitotracker Green FM for the last 15 min. HeLa cells were
then fixed with paraformaldehyde solution in PBS (4%). Fixed cells were then incubated
in blocking solution (0.2% BSA, 0,05 % Saponin in PBS) for 15 min at RT, and incubated
with indicated primary antibodies for 1 h, anti-GM130 (BD Biosciences, catalog
number 610823, batch 4324839) anti-TGN46 (AbD Serotec, AHP500), anti-KDEL (Santa
Cruz Biotechnology, catalog number sc-58774) and anti-LAMP antibodies (BD
Biosciences) were used at 1:1000, 1:1000. 1:50 and 1:3000 dilution, respectively and
detected using Alexa 488 conjugated secondary antibodies (Jackson ImmunoResearch
Laboratory) at 1:400 dilution. Coverslips were mounted on glass slides using Prolong
13
Glass Antifade Mountant. Leica SP8 confocal microscope was used to analyse the samples.
Ru compounds were excited at 488 nm and emission above 650nm was recorded. Images
were recorded in Cellular and Molecular Imaging Technical Platform, INSERM UMS 025 CNRS UMS 3612, Faculty of Pharmacy of Paris, Paris Descartes University, Paris, France.
Colocalisation values were calculated using Fiji software.26
Seahorse mito stress test
CT-26 cells were seeded in Seahorse XFe96 well plate at density of 30 000 cells per well
in 80 µl. After 24 h cells were treated with 1 µM concentration of: complex 6, cisplatin or
5-ALA according to the plate arrangement (Figure S53). After 4 h incubation media was
exchanged for fresh complete media and chosen wells were irradiated for 2 h at 595 nm
using a LUMOS-BIO photoreactor (Atlas Photonics). Each well was individually
illuminated with a LED at constant current. Wells that were not irradiated were covered
with aluminium foil. After irradiation regular media was removed and the cells were
washed thrice using bicarbonate and serum free DMEM, supplemented with glucose, 1.8
mg/ mL; 1% glutamine and 1% sodium pyruvate and incubated in a non-CO2 incubator at
37 °C for 1 h. Mito Stress assay was run using Oligomycin, 1 μM, FCCP 1 μM and mixture
of Antimycin-A/ Rotenone 1 μM each in ports A, B and C respectively using Seahorse
XFe96 Extracellular Flux Analyzer.
Seahorse glycolysis stress test
CT-26 cells were seeded in Seahorse XFe96 well plate at density of 30 000 cells per well
in 80 µl. After 24 h cells were treated with 1 µM concentration of: complex 6, cisplatin or
5-ALA according to the plate arrangement (Figure S53). After 4 h incubation media was
exchanged for fresh complete media and chosen wells were irradiated for 2 h at 595 nm
using a LUMOS-BIO photoreactor (Atlas Photonics). Each well was individually
illuminated with a LED at constant current. Wells that were not irradiated were covered
with aluminium foil. After irradiation regular media was removed and the cells were
washed thrice using bicarbonate and serum free DMEM and incubated in a non-CO2
incubator at 37 °C for 1 h. Glycolytic stress test was run using glucose, 10 mM, Oligomycin,
1 μM and 2-Deoxyglucose, 50 mM in ports A, B and C respectively using Seahorse XFe96
Extracellular Flux Analyzer.
14
Generation of 3D HeLa MCTS
HeLa cells were seeded at a density of 5000 cells per well in 200 µL in low attachment
round bottom plates (Corning 4515). The single cells would generate MCTS
approximately 400 µm in diameter at day 4 at. Plates were kept in the incubator at 37 °C
with 5 % CO2.
(Photo‐)cytotoxicity in 3D HeLa MCTSs
HeLa MCTSs after 4 days of growing at 37 °C and 5 % CO₂ were treated by replacing half
of the medium in the well by the treatment solutions. For untreated reference MCTS, half
of the medium was replaced by fresh medium only. For dark treatment, the cells were
treated with increasing concentration of compounds for 24 h. Then medium was removed
and replaced by fresh culture medium followed by 44 h incubation in the dark. For
phototoxicity treatment, cells were also treated for 24 h with increasing concentration of
compounds in the dark. Then medium was removed and replaced by fresh culture
medium prior to 2 h of irradiation at 595 nm in using a LUMOS-BIO photoreactor (Atlas
Photonics). Each well was individually illuminated with a LED at constant current. Plates
were incubated for 44 h. The cytotoxicity was measured using CellTiter-Glo Cell viability
kit (Promega, USA).
15
SUPPORTING FIGURES AND TABLES
Table S1. Cartesian coordinates of the optimized structure of complex 1.
X
Y
Z
C
-0.55825800
-1.96095500
2.11992700
C
-1.32520200
-2.95947100
2.73615900
C
-2.57829600
-3.25637400
2.24465400
C
-3.06351800
-2.54957200
1.12647700
C
-4.34971300
-2.77696100
0.53919300
C
-4.76366600
-2.06185400
-0.54228300
C
-3.92623100
-1.06012200
-1.13032600
C
-4.29645200
-0.29247000
-2.25201600
C
-3.41537600
0.64568400
-2.74488300
C
-2.17012700
0.81945000
-2.12553800
C
-2.65677500
-0.81781200
-0.56873200
C
-2.22376500
-1.56600500
0.56718600
C
2.17016700
0.81998000
2.12493100
C
3.41540600
0.64639700
2.74433400
C
4.29647000
-0.29192300
2.25176300
C
3.92622600
-1.05989200
1.13031100
C
4.76365600
-2.06180800
0.54257700
C
4.34968700
-2.77729400
-0.53863300
C
3.06349400
-2.55009700
-1.12600800
C
2.57828400
-3.25721700
-2.24396500
C
1.32523200
-2.96035700
-2.73563200
C
0.55834500
-1.96157600
-2.11979800
C
2.22376000
-1.56630200
-0.56706400
C
2.65675600
-0.81777000
0.56865400
-0.00022700
Ru
0.00000600
0.22859500
N
-0.99051300
-1.27662700
1.06515800
N
0.99057200
-1.27692700
-1.06521200
N
1.79285000
0.10923100
1.06602700
N
-1.79284000
0.10902500
-1.06640500
C
-0.44617000
3.06821300
0.58482200
C
-0.92736500
4.22724500
1.19106300
C
-1.76280900
4.12552500
2.29500100
C
-2.10011900
2.86312400
2.76981300
C
-1.58958200
1.74883800
2.12081700
N
-0.78172800
1.84151000
1.05500000
C
0.44577800
3.06833800
-0.58496600
C
0.92665100
4.22749500
-1.19122600
C
1.76249300
4.12600500
-2.29488000
C
2.10055300
2.86368500
-2.76939100
C
1.59016100
1.74927200
-2.12050900
N
0.78185400
1.84172300
-1.05501100
H
0.42737700
-1.70452600
2.49214500
H
-0.91820400
-3.48203200
3.59416400
H
-3.19246400
-4.02400000
2.70531200
H
-4.99091900
-3.53494500
0.97817000
H
-5.74040200
-2.23999000
-0.98131900
H
-5.26612700
-0.44670400
-2.71513600
H
-3.66460500
1.25466200
-3.60622700
16
H
-1.46034500
1.54863800
-2.49979900
H
1.46044700
1.54933800
2.49896400
H
3.66460000
1.25561600
3.60551800
H
5.26612700
-0.44607100
2.71494300
H
5.74039300
-2.23979800
0.98167400
H
4.99088400
-3.53545400
-0.97732300
H
3.19236900
-4.02509300
-2.70431500
H
0.91824800
-3.48322900
-3.59345700
H
-0.42724300
-1.70521600
-2.49216800
H
-0.65585400
5.20236000
0.80614600
H
-2.14396300
5.02035900
2.77520200
H
-2.74834400
2.73302700
3.62865400
H
-1.82296300
0.74556400
2.45707300
H
0.65454100
5.20253300
-0.80652900
H
2.14336700
5.02094900
-2.77510000
H
2.74927400
2.73376100
-3.62788300
H
1.82399000
0.74603000
-2.45659800
C
-0.55825800
-1.96095500
2.11992700
Table S2. Cartesian coordinates of the optimized structure of complex 2.
X
Y
Z
C
-0.07795000
-2.37011400
2.04174200
C
0.32568500
-3.60818400
2.56061300
C
1.31528700
-4.32403000
1.92216300
C
1.90355100
-3.79521800
0.75601800
C
2.94035400
-4.45376100
0.01953800
C
3.47380500
-3.89001300
-1.09806300
C
3.01386200
-2.62127900
-1.57764400
C
3.52375400
-1.98850100
-2.72878300
C
3.00941000
-0.76736500
-3.10807600
C
1.98774400
-0.17986700
-2.34937000
-0.87205500
C
1.99103700
-1.95698000
C
1.43499600
-2.54604600
0.30320100
C
-1.56193800
-1.78469500
-2.04093000
C
-2.70290000
-2.40839000
-2.56423700
C
-3.91682100
-2.24903100
-1.93155800
C
-3.98555500
-1.46251700
-0.76485100
C
-5.19478500
-1.23175700
-0.03303300
C
-5.20065800
-0.46041000
1.08795300
C
-3.99750700
0.14509900
1.57450900
C
-3.93918300
0.94994600
2.72956400
C
-2.72876200
1.48439400
3.11592000
C
-1.57975800
1.21744900
2.35880200
C
-2.79515500
-0.06740100
0.87056500
C
-2.78949300
-0.87426400
-0.30749800
Ru
-0.01503200
-0.03870600
0.00290600
N
0.45927900
-1.84594200
0.94408400
N
-1.60435600
0.46121700
1.26472800
N
-1.59689100
-1.03364400
-0.94402000
N
1.48548700
-0.75448500
-1.26026800
C
1.50067100
2.41741700
0.53655200
17
C
2.42028500
3.29933200
1.09947700
C
3.27228800
2.88204500
2.12019800
C
3.15761600
1.55297200
2.53982700
C
2.22400400
0.72332600
1.94523900
N
1.40569800
1.13594600
0.96483800
C
0.56645400
2.78686400
-0.53971200
C
0.50322100
4.05765000
-1.10667100
C
-0.40890400
4.33856700
-2.12228500
C
-1.24015300
3.29281500
-2.53468400
C
-1.12999900
2.05013200
-1.93640200
N
-0.24843700
1.78987300
-0.95969200
C
4.26992100
3.81019400
2.73863800
C
-0.50591700
5.69915200
-2.73788000
H
-0.85122800
-1.78695900
2.52882300
H
-0.14985300
-3.98327900
3.45956300
H
1.64436800
-5.28488300
2.30535500
H
3.29602800
-5.41564000
0.37498400
H
4.26145600
-4.39513300
-1.64839000
H
4.31339100
-2.46417600
-3.30208700
H
3.37626100
-0.25032700
-3.98723400
H
1.56385700
0.77688800
-2.63169300
H
-0.59683400
-1.89347200
-2.52363100
H
-2.61095300
-3.00690200
-3.46313700
H
-4.81443300
-2.72172300
-2.31872100
H
-6.11179700
-1.68614300
-0.39435100
H
-6.12213400
-0.29021100
1.63584300
H
-4.84220000
1.13957100
3.30183200
H
-2.64503500
2.10859500
3.99817600
H
-0.61608700
1.62388300
2.64610800
H
2.47817800
4.32222900
0.74617300
H
3.79053000
1.15908600
3.32862200
H
2.11379600
-0.30878100
2.25742000
H
1.16634900
4.84067500
-0.75845900
H
-1.97288800
3.43801600
-3.32151000
H
-1.75819100
1.22235800
-2.24443200
H
0.30326600
6.35063800
-2.40323800
H
-1.45787400
6.16877300
-2.46884600
H
-0.47506000
5.63420600
-3.82934700
H
5.28477600
3.42546400
2.60120800
H
4.10038400
3.89662000
3.81620100
H
4.21682500
4.80776400
2.29847600
Table S3. Cartesian coordinates of the optimized structure of complex 3.
X
Y
Z
C
-2.95990900
1.45739100
1.64568700
C
-3.96399900
2.41394600
1.84886500
C
-4.27762300
3.29701200
0.83843100
C
-3.58135300
3.21976500
-0.38393100
C
-3.82628000
4.08976800
-1.49461600
C
-3.11898000
3.96750300
-2.65083900
C
-2.10802500
2.96383600
-2.79611500
C
-1.34710700
2.78479700
-3.96830200
18
C
-0.39896700
1.78549600
-4.00844800
C
-0.20846700
0.96578700
-2.88747000
C
-1.84926300
2.09620200
-1.71632800
C
-2.58966500
2.22597200
-0.50312100
C
-0.20847700
-0.96578800
2.88747000
C
-0.39898600
-1.78549300
4.00845000
C
-1.34713200
-2.78478800
3.96830400
C
-2.10804500
-2.96382700
2.79611400
C
-3.11900500
-3.96749000
2.65083700
C
-3.82630000
-4.08975500
1.49461100
C
-3.58136500
-3.21975600
0.38392500
C
-4.27763100
-3.29700200
-0.83844000
C
-3.96400000
-2.41393900
-1.84887400
C
-2.95990700
-1.45738700
-1.64569400
C
-2.58967300
-2.22596700
0.50311600
C
-1.84927500
-2.09619800
1.71632600
Ru
-0.78219500
-0.00000100
-0.00000100
N
-2.28539300
1.36210300
0.50369400
N
-2.28539500
-1.36210000
-0.50369900
N
-0.91194200
-1.11014100
1.76844800
N
-0.91193500
1.11014100
-1.76845000
C
2.05739200
-0.66425700
-0.31634600
C
3.22242900
-1.36150000
-0.62729100
C
3.10534200
-2.60656500
-1.22357200
C
1.85510600
-3.13916700
-1.50235400
C
0.74457800
-2.38206700
-1.16110100
N
0.83186300
-1.17644100
-0.58315100
C
2.05739200
0.66425200
0.31634900
C
3.22243100
1.36149300
0.62729600
C
3.10534500
2.60655700
1.22357700
C
1.85511000
3.13916200
1.50235700
C
0.74458000
2.38206400
1.16110300
N
0.83186400
1.17643700
0.58315200
Br
4.69898900
-3.60306300
-1.66699600
Br
4.69899300
3.60305300
1.66700200
H
-2.69178700
0.75514800
2.42677600
H
-4.47823500
2.44364400
2.80248500
H
-5.05054800
4.04741600
0.97246100
H
-4.59117500
4.85348300
-1.39384900
H
-3.31075100
4.63153800
-3.48778000
H
-1.51426600
3.43141700
-4.82430800
H
0.20512100
1.61696300
-4.89245600
H
0.52832200
0.17060800
-2.89958300
H
0.52831700
-0.17061500
2.89958300
H
0.20509900
-1.61696000
4.89246000
H
-1.51429800
-3.43140400
4.82431100
H
-3.31078200
-4.63152200
3.48777800
H
-4.59119800
-4.85346700
1.39384200
H
-5.05055800
-4.04740400
-0.97247100
H
-4.47823300
-2.44363600
-2.80249600
H
-2.69178100
-0.75514500
-2.42678200
H
4.19826000
-0.94813400
-0.40953300
H
1.73098500
-4.10889300
-1.96798100
19
H
-0.25478900
-2.74960300
-1.36091800
H
4.19826100
0.94812500
0.40953900
H
1.73098900
4.10888700
1.96798400
H
-0.25478700
2.74960100
1.36091800
Table S4. Cartesian coordinates of the optimized structure of complex 4.
X
Y
Z
C
2.67238300
-1.29449200
1.77240700
C
3.66829400
-2.23527000
2.06874500
C
3.96207400
-3.22620600
1.15710600
C
3.25461300
-3.27192300
-0.06043200
C
3.47848000
-4.26014700
-1.07213300
C
2.75978600
-4.25701700
-2.22773600
C
1.75826000
-3.26312600
-2.47172600
C
0.98542300
-3.20576200
-3.64817800
C
0.04694400
-2.20654200
-3.78866500
C
-0.12090700
-1.26552900
-2.76361800
C
1.52177500
-2.27912000
-1.49133000
C
2.27267400
-2.28462300
-0.27728700
C
-0.09831600
1.26289600
2.76188100
C
0.08174400
2.20148300
3.78705500
C
1.02701200
3.19380800
3.64286000
C
1.79439000
3.24660400
2.46261400
C
2.80188200
4.23339100
2.21432100
C
3.51452400
4.23236700
1.05495600
C
3.27839600
3.24664400
0.04355400
C
3.97906700
3.19687600
-1.17779500
C
3.67322000
2.20887800
-2.08868200
C
2.67232300
1.27484900
-1.78777800
C
2.29053400
2.26623700
0.26470700
C
1.54571200
2.26534300
1.48250200
Ru
0.48295100
-0.00262700
-0.00261300
N
1.98660200
-1.31399600
0.63323400
N
1.99286200
1.29828900
-0.64487400
N
0.61210700
1.28694800
1.63801900
N
0.59490300
-1.29372200
-1.64326600
C
-2.35513600
-0.61135500
0.39803600
C
-3.51390200
-1.25720200
0.81200300
C
-3.42732100
-2.41716800
1.57421600
C
-2.16212100
-2.91588000
1.87827800
C
-1.04478800
-2.22903400
1.42714000
N
-1.12879700
-1.09928700
0.71261600
C
-2.35185800
0.62571100
-0.39537100
C
-3.50706500
1.27388000
-0.81531900
C
-3.41529400
2.44581300
-1.55858300
C
-2.14721200
2.92593700
-1.88071000
C
-1.03344800
2.22707100
-1.43906100
N
-1.12299800
1.10595000
-0.71177000
C
-4.72361200
-3.06995700
1.97700100
C
-4.71105300
3.07928700
-1.99441100
O
-5.74488200
2.42029100
-1.98950000
20
N
-4.65058500
4.36503200
-2.38758800
N
-4.66264300
-3.94037000
3.00203700
O
-5.75595000
-2.80636500
1.37073300
H
2.42023900
-0.51063600
2.47757800
H
4.19113800
-2.16785700
3.01581700
H
4.72714300
-3.96796400
1.36497800
H
4.23685900
-5.01649400
-0.89601800
H
2.93534300
-5.01107300
-2.98861600
H
1.13555600
-3.94508700
-4.42887700
H
-0.56657100
-2.13073900
-4.67895200
H
-0.84990000
-0.46857000
-2.85466800
H
-0.83323100
0.47155900
2.85513000
H
-0.52780700
2.12941400
4.68037600
H
1.18659300
3.93115600
4.42354500
H
2.98688100
4.98543200
2.97496100
H
4.27741000
4.98338600
0.87558200
H
4.74838900
3.93324100
-1.38918600
H
4.19040700
2.13859600
-3.03864900
H
2.41075900
0.49340200
-2.49222400
H
-4.49803000
-0.88490500
0.55412000
H
-2.01707100
-3.83532300
2.43427100
H
-0.04554600
-2.58749300
1.64258900
H
-4.49326200
0.88884000
-0.58576200
H
-1.99471400
3.81085700
-2.48811600
H
-0.03262400
2.56485900
-1.67916900
H
-3.84583700
4.94804300
-2.22977800
H
-5.51422500
4.82025900
-2.64026600
H
-3.86038700
-4.01650800
3.60482100
H
-5.52569400
-4.35443100
3.31935200
Table S5. Cartesian coordinates of the optimized structure of complex 5.
X
Y
Z
C
-3.24699200
1.80178400
1.24947200
C
-4.24267300
2.78782100
1.21960900
C
-4.53541800
3.42499900
0.03277500
C
-3.82645500
3.06811200
-1.13105500
C
-4.04862600
3.66798200
-2.41248700
C
-3.32946400
3.28315900
-3.50201300
C
-2.32874800
2.26321600
-3.40466000
C
-1.55470400
1.82115500
-4.49549700
C
-0.61578700
0.83178800
-4.29552800
C
-0.44949200
0.28160400
-3.01704400
C
-2.09372800
1.65730500
-2.15420100
C
-2.84497400
2.06375900
-1.01031100
C
-0.44301300
-0.28189200
3.01493200
C
-0.60500700
-0.83257000
4.29376000
C
-1.54001300
-1.82527300
4.49550100
C
-2.31449400
-2.27015600
3.40611800
C
-3.31149400
-3.29354900
3.50541200
C
-4.03142600
-3.68085600
2.41727400
C
-3.81380200
-3.08021300
1.13542100
21
C
-4.52393900
-3.43937100
-0.02698900
C
-4.23590100
-2.80097900
-1.21432200
C
-3.24367300
-1.81152300
-1.24611800
C
-2.83595500
-2.07255500
1.01276100
C
-2.08389500
-1.66353300
2.15518800
Ru
-1.05561300
-0.00134200
-0.00048200
N
-2.55980300
1.44484200
0.16817800
N
-2.55535500
-1.45250200
-0.16622800
N
-1.16230900
-0.67871100
1.96894200
N
-1.16833700
0.67573600
-1.96972000
C
1.79365900
0.72187200
0.16529700
C
2.94540100
1.47369000
0.32610100
C
2.89541500
2.84836400
0.64295000
C
1.59440700
3.38505000
0.78178600
C
0.48992200
2.58134100
0.60853400
N
0.56001800
1.27196800
0.30856300
C
1.79565500
-0.71571200
-0.16923800
C
2.94949600
-1.46395200
-0.33200000
C
2.90317800
-2.83767600
-0.65298800
C
1.60388200
-3.37738700
-0.79490400
C
0.49707200
-2.57781400
-0.61698400
N
0.56361000
-1.26928200
-0.31266500
C
4.11786700
3.58173300
0.79619500
C
4.12782100
-3.56767200
-0.80681400
C
4.19511500
-4.90710700
-1.08585200
1.08517600
C
4.18139400
4.91952200
N
5.29938000
5.64415400
1.23380300
N
5.31438900
-5.62400500
-1.26468600
C
6.59996200
5.02459500
1.09381100
C
5.25299800
7.05779100
1.54452200
C
6.61427800
-4.99759900
-1.15425400
C
5.27215200
-7.06025100
-1.44583000
H
-2.99514900
1.29154900
2.17263000
H
-4.76720900
3.03522600
2.13546000
H
-5.30070900
4.19362200
-0.01523000
H
-4.80585600
4.44146200
-2.49644500
H
-3.50348200
3.74479900
-4.46904300
H
-1.70389800
2.26127600
-5.47673300
H
-0.00055000
0.46713000
-5.11015100
H
0.27996300
-0.49941800
-2.83367100
H
0.28329900
0.50171200
2.83012400
H
0.01039800
-0.46563900
5.10723600
H
-1.68585300
-2.26586200
5.47703200
H
-3.48210700
-3.75570900
4.47280200
H
-4.78586600
-4.45689500
2.50269700
H
-5.28648200
-4.21062500
0.02249400
H
-4.76155000
-3.05000800
-2.12909300
H
-2.99558500
-1.30018900
-2.16968800
H
3.91506000
1.00471400
0.20329400
H
1.42998900
4.42855700
1.02499000
H
-0.50920700
2.98958900
0.71461600
H
3.91785500
-0.99253600
-0.20831800
H
1.44274800
-4.41959100
-1.04573600
22
H
-0.50095100
-2.98840500
-0.72442000
H
5.03627700
3.01776600
0.66626700
H
5.04450300
-3.00020900
-0.68016000
H
3.28291600
-5.48966600
-1.18517500
H
3.26757100
5.49342300
1.21440600
H
6.72066100
4.58994900
0.09468100
H
6.73790800
4.22980800
1.83632700
H
7.37426900
5.77733600
1.24155000
H
4.21507800
7.38632900
1.61457400
H
5.75146100
7.64283800
0.76384900
H
5.74831600
7.26201000
2.50024400
H
6.68385100
-4.13472000
-1.82524100
H
7.38405000
-5.71700300
-1.43414100
H
6.80782000
-4.65737900
-0.12933300
H
4.23674400
-7.38956200
-1.54452700
H
5.72206400
-7.57804400
-0.59060500
H
5.81749800
-7.34797200
-2.35069400
Table S6. Cartesian coordinates of the optimized structure of complex 6.
X
Y
Z
C
-0.20433800
-1.17647900
-2.17035000
C
-0.83768700
-2.19745200
-2.88108300
C
-2.14772700
-2.55525600
-2.59848900
C
-2.82562400
-1.81031300
-1.59155300
C
-4.19804200
-2.00280500
-1.23596800
C
-4.79827800
-1.25281400
-0.27122500
C
-4.08926500
-0.22937900
0.43408000
C
-4.65964700
0.58031500
1.45798800
C
-3.81925800
1.47587300
2.10313400
C
-2.48188000
1.60417000
1.72416000
C
-2.73076100
-0.02705700
0.11118900
C
-2.10614700
-0.79978900
-0.91914000
C
0.20420800
-1.17670100
2.17037000
C
0.83744300
-2.19788000
2.88091700
C
2.14742600
-2.55578700
2.59822600
C
2.82542100
-1.81071000
1.59146500
C
4.19786000
-2.00320000
1.23596500
C
4.79817800
-1.25310300
0.27135900
C
4.08924000
-0.22958300
-0.43389700
C
4.65971100
0.58018700
-1.45770400
C
3.81938900
1.47588300
-2.10275500
C
2.48200600
1.60420900
-1.72382100
C
2.73073400
-0.02721900
-0.11103600
C
2.10604300
-0.80002500
0.91919100
Ru
0.00002000
1.00417700
0.00010800
N
-0.80906000
-0.49579700
-1.20172100
N
1.94328200
0.88646700
-0.74342000
N
0.80898600
-0.49594900
1.20182400
N
-1.94323900
0.88651600
0.74365000
C
-0.33309400
3.84788000
-0.65614600
23
C
-0.68410800
5.00726100
-1.34357000
C
-1.31312700
4.93440100
-2.58495800
C
-1.57105400
3.65697700
-3.09169300
C
-1.19826500
2.54107100
-2.36375700
N
-0.58835100
2.62180000
-1.17170100
C
0.33344400
3.84783200
0.65638400
C
0.68459900
5.00717700
1.34381800
C
1.31361300
4.93424500
2.58518800
C
1.57126200
3.65678000
3.09199900
C
1.19835500
2.54092900
2.36405900
N
0.58852700
2.62173200
1.17194900
C
-1.68879800
6.16523500
-3.34905400
C
1.69010700
6.16500400
3.34900100
H
0.82491600
-0.90956800
-2.38243200
H
-0.27621300
-2.73201400
-3.63936400
H
-4.77001500
-2.76145400
-1.75723800
H
-5.83680100
-1.43482700
-0.02066000
H
-4.20273600
2.11552600
2.89031800
H
-1.83054900
2.31694400
2.21726100
H
-0.82500400
-0.90968800
2.38252700
H
0.27592800
-2.73250800
3.63912200
H
4.76979900
-2.76187300
1.75724200
H
5.83673600
-1.43503800
0.02088900
H
4.20292400
2.11562800
-2.88983600
H
1.83073700
2.31707900
-2.21686700
H
-0.46971000
5.97917200
-0.91455900
H
-2.06111100
3.52524800
-4.05076300
H
-1.38408100
1.54090100
-2.73760400
H
0.47025800
5.97911100
0.91483800
H
2.06115900
3.52499700
4.05114500
H
1.38394300
1.54073100
2.73794600
H
1.52118100
7.06976000
2.76214100
H
2.74308900
6.13076400
3.64399700
H
1.09967500
6.23704100
4.26849500
H
-2.73948600
6.12794100
-3.65161400
H
-1.09201100
6.24102500
-4.26417200
H
-1.52692200
7.06950000
-2.75945000
C
6.08425900
0.50396200
-1.84614200
C
6.43095000
0.38449700
-3.19851800
C
7.10336800
0.60773200
-0.88913300
C
7.76736900
0.35301000
-3.58310200
H
5.64807500
0.29762100
-3.94683800
-1.27870900
C
8.43872000
0.58488500
H
6.84922300
0.73662600
0.15901700
C
8.77400100
0.45296200
-2.62473100
H
8.02230200
0.24873600
-4.63344600
H
9.21836100
0.67673600
-0.52853600
H
9.81699300
0.43141300
-2.92625900
C
2.77721700
-3.67179100
3.33586400
C
3.38981300
-4.73553600
2.65898400
C
2.71668100
-3.70072900
4.73534200
C
3.93544100
-5.79983500
3.36982000
H
3.41301300
-4.74291600
1.57305200
24
C
3.27176800
-4.76207200
5.44273700
H
2.24914500
-2.87774100
5.26868200
C
3.88231400
-5.81358300
4.76216000
H
4.39779300
-6.62279700
2.83314500
H
3.22827600
-4.76644100
6.52771700
H
4.31273600
-6.64317000
5.31506300
C
-6.08420300
0.50413400
1.84642500
C
-6.43087800
0.38386300
3.19872800
C
-7.10330200
0.60874200
0.88949800
C
-7.76729800
0.35236500
3.58332200
H
-5.64799300
0.29638000
3.94696900
C
-8.43864900
0.58587700
1.27909400
H
-6.84916700
0.73837800
-0.15856700
C
-8.77392800
0.45311400
2.62503600
H
-8.02222000
0.24746100
4.63360600
H
-9.21829100
0.67838100
0.52900200
H
-9.81691900
0.43155200
2.92656400
C
-2.77763800
-3.67097600
-3.33643600
C
-3.39106200
-4.73445800
-2.65989200
C
-2.71642300
-3.69993100
-4.73589000
C
-3.93677300
-5.79852600
-3.37100300
H
-3.41492300
-4.74173200
-1.57397900
-5.44357200
C
-3.27159100
-4.76103600
H
-2.24831100
-2.87712300
-5.26900200
C
-3.88291800
-5.81230200
-4.76331500
H
-4.39977400
-6.62127900
-2.83456600
H
-3.22755900
-4.76540700
-6.52853000
H
-4.31340400
-6.64170500
-5.31644300
Table S7. Cartesian coordinates of the optimized structure of complex 7.
X
Y
Z
C
-0.79242200
-1.98975200
2.04237000
C
-1.63210200
-2.95676000
2.59828300
C
-2.85947500
-3.25014500
2.02177900
C
-3.19790600
-2.56234100
0.82163200
C
-4.38992100
-2.80175100
0.06712700
C
-4.66066800
-2.11624900
-1.07750800
C
-3.76177600
-1.12927000
-1.59259700
C
-3.99399800
-0.37741000
-2.77968800
C
-3.06059800
0.59470400
-3.10917100
C
-1.91778100
0.78499800
-2.32985300
C
-2.58111200
-0.86950600
-0.86502200
C
-2.28962900
-1.60032900
0.33120000
C
1.91754400
0.78562200
2.33002000
C
3.06047200
0.59580100
3.10929700
C
3.99438100
-0.37575500
2.77961800
C
3.76258900
-1.12747700
1.59235600
C
4.66205200
-2.11381600
1.07703400
C
4.39165200
-2.79926200
-0.06771800
C
3.19944600
-2.56042800
-0.82210500
C
2.86133100
-3.24826200
-2.02232000
25
C
1.63374700
-2.95552300
-2.59869300
C
0.79357000
-1.98903500
-2.04261900
-0.33148500
C
2.29065000
-1.59900400
C
2.58176600
-0.86823300
0.86486000
Ru
0.00001000
0.18367700
0.00004700
N
-1.11021300
-1.30780100
0.94633800
N
1.11104600
-1.30703300
-0.94652500
N
1.66347500
0.06386700
1.24287400
N
-1.66333100
0.06318800
-1.24282900
C
-0.50282300
3.03536600
0.54115400
C
-1.03199700
4.18908700
1.09504000
C
-1.99022800
4.14247900
2.12992600
C
-2.35380400
2.84322900
2.55332700
C
-1.79108200
1.73656300
1.95762000
N
-0.88080700
1.80312200
0.96933800
C
0.50120300
3.03578200
-0.54044500
C
1.02969600
4.18992800
-1.09409800
C
1.98791700
4.14408700
-2.12903100
C
2.35226500
2.84513700
-2.55269200
C
1.79021700
1.73802000
-1.95719100
N
0.87991100
1.80385200
-0.96888900
C
-2.51350000
5.36676100
2.66300600
C
2.51041300
5.36878800
-2.66190700
C
3.47075600
5.43497300
-3.63604400
C
-3.47430400
5.43215400
3.63673700
N
-3.96865800
6.54940200
4.19123700
N
3.96433600
6.55265300
-4.19035100
C
-3.50880600
7.85166500
3.75949900
C
-5.09301700
6.50314400
5.10299600
C
3.50407500
7.85454600
-3.75792700
C
5.08799800
6.50725400
-5.10300800
H
0.15541500
-1.74390700
2.50822100
H
-1.32501900
-3.45291400
3.51248100
H
-5.08824600
-3.55234300
0.41843300
H
-5.58083600
-2.31436200
-1.61465400
H
-3.19057100
1.19671900
-4.00185700
H
-1.17432900
1.52577900
-2.60235600
H
1.17368100
1.52594000
2.60266400
H
3.19012700
1.19770200
4.00210700
H
5.58238800
-2.31144700
1.61407100
H
5.09040700
-3.54937900
-0.41918700
H
1.32686900
-3.45175700
-3.51291800
H
-0.15441600
-1.74365700
-2.50841600
H
-0.71067800
5.15748300
0.72881600
H
-3.07279300
2.68270800
3.34863100
H
-2.06667800
0.73848200
2.28028900
H
0.70780700
5.15807200
-0.72770200
H
3.07133800
2.68521600
-3.34803700
H
2.06640500
0.74015600
-2.28002100
H
-2.11439000
6.28401000
2.24140600
H
2.11097900
6.28570400
-2.23988700
H
3.90462000
4.52198900
-4.03586600
H
-3.90792400
4.51882600
4.03603200
26
H
-3.83249600
8.07292800
2.73452800
H
-2.41587800
7.90276500
3.79724900
H
-3.91405200
8.61364300
4.42591600
H
-5.29800100
5.46888400
5.38360600
H
-5.99458000
6.92380600
4.64158400
H
-4.87042900
7.07350500
6.01037700
H
2.41111200
7.90521300
-3.79528200
H
3.90878200
8.61696900
-4.42416000
H
3.82802600
8.07551200
-2.73297800
H
5.29340300
5.47317400
-5.38397200
H
5.98965600
6.92839300
-4.64222400
H
4.86435200
7.07763800
-6.01011900
C
-5.16755400
-0.59254900
-3.65354800
C
-5.94945300
0.50099700
-4.04841300
C
-5.48500900
-1.86723700
-4.14295300
C
-7.03403500
0.32100800
-4.90073500
H
-5.71464200
1.49175100
-3.66939900
C
-6.56531800
-2.04196700
-5.00212000
H
-4.86739100
-2.71896900
-3.87270000
C
-7.34487600
-0.95026300
-5.37913100
H
-7.63828000
1.17567000
-5.18993600
H
-6.79401700
-3.03315700
-5.38207200
H
-8.19016300
-1.08947600
-6.04645600
C
-3.74978200
-4.24363100
2.65963600
C
-5.08562900
-3.93836700
2.95538300
C
-3.24165000
-5.49649700
3.02714100
C
-5.89485000
-4.87092900
3.59661000
H
-5.48299400
-2.95817700
2.70800900
C
-4.05618100
-6.42944100
3.66065500
H
-2.20903700
-5.74381800
2.79701400
C
-5.38436800
-6.11937500
3.94629500
H
-6.92511600
-4.61817800
3.82859000
H
-3.65253300
-7.40096600
3.92966400
H
-6.01895300
-6.84729000
4.44292100
C
3.75222000
-4.24110600
-2.66037200
C
3.24500300
-5.49441700
-3.02759900
C
5.08772300
-3.93476500
-2.95655800
C
4.06011400
-6.42675600
-3.66126300
H
2.21266100
-5.74255700
-2.79714100
-3.59794300
C
5.89751500
-4.86672300
H
5.48435300
-2.95422000
-2.70940500
C
5.38795900
-6.11562700
-3.94733900
H
3.65718300
-7.39864000
-3.93005100
H
6.92750200
-4.61314500
-3.83026400
H
6.02299100
-6.84307000
-4.44408300
C
5.16800300
-0.59055100
3.65347500
C
5.48587000
-1.86518800
4.14275100
C
5.94951900
0.50321700
4.04846700
C
6.56621900
-2.03964000
5.00192400
H
4.86852700
-2.71709700
3.87241900
C
7.03414400
0.32350400
4.90079600
H
5.71437200
1.49392800
3.66954900
C
7.34540200
-0.94771200
5.37906400
27
H
6.79524300
-3.03079100
5.38178200
H
7.63809300
1.17834000
5.19010200
H
8.19072100
-1.08671100
6.04639400
Scheme S1. Synthesis of the desired complexes 1-7. a) EtOH/H2O (1:1), 18 h reflux under
N2 atmosphere. b) EtOH/H2O (1:1), 18 h reflux under N2 atmosphere. c) tert-Butoxy
bis(dimethylamino)methane, 140 °C, 16 h under N2 atmosphere.
28
Figure S1. 1H NMR spectrum of 1 in CD3CN, 500 MHz.
Figure S2. 13C NMR spectrum of 1 in CD3CN, 125 MHz.
29
Figure S3. 1H NMR spectrum of 2 in CD3CN, 400 MHz.
Figure S4. 13C NMR spectrum of 2 in CD3CN, 100 MHz.
30
Figure S5. 1H NMR spectrum of 3 in CD3CN, 500 MHz.
Figure S6. 13C NMR spectrum of 3 in CD3CN, 125 MHz.
31
Figure S7. 1H NMR spectrum of 4 in CD3CN, 400 MHz.
Figure S8. 13C NMR spectrum of 4 in CD3CN, 100 MHz.
32
Figure S9. 1H NMR spectrum of 5 in CD3CN, 400 MHz.
Figure S10. 13C NMR spectrum of 5 in CD3CN, 125 MHz.
33
Figure S11. 1H NMR spectrum of 6 in CD3CN, 400 MHz.
Figure S12. 13C NMR spectrum of 6 in CD3CN, 125 MHz.
34
Figure S13. 1H NMR spectrum of 7 in CD3CN, 500 MHz.
Figure S14. 1H NMR spectrum of 7 in CD3CN, 125 MHz.
35
Figure S15. The molecular structure of 1 with displacement ellipsoids drawn at the 20%
probability level. Solvent molecules, counterions and hydrogen atoms are excluded for
clarity.
Figure S16. The molecular structure of 2 with displacement ellipsoids drawn at the 20%
probability level. Solvent molecules, counterions and hydrogen atoms are excluded for
clarity.
36
Figure S17. The molecular structure of 3 with displacement ellipsoids drawn at the
20% probability level. Solvent molecules, counterions and hydrogen atoms are excluded
for clarity.
37
Table S8. Crystal data and structure refinement parameters for 1 and 2.
1
2
CCDC number
1969709
Empirical formula
C38H30F12N8P2Ru
Formula weight
989.71
Temperature/K
183(1)
Crystal system
monoclinic
Space group
P21/c
a/Å
12.4678(3)
b/Å
27.4167(4)
c/Å
13.2004(3)
α/°
90
β/°
118.159(3)
γ/°
90
Volume/Å3
3978.16(16)
Z
4
3
ρcalcg/cm
1.652
-1
μ/mm
4.832
F(000)
1984.0
Crystal size/mm3
0.11 × 0.06 × 0.04
Radiation
CuKα (λ = 1.54184)
2Θ range for data collection/° 6.448 to 148.99
Index ranges
-15 ≤ h ≤ 14, -30 ≤ k ≤ 34, -16 ≤ l ≤ 16
Reflections collected
30861
Independent reflections
8116 [Rint = 0.0339, Rsigma = 0.0251]
Data/restraints/parameters 8116/114/524
Goodness-of-fit on F2
1.150
Final R indexes [I>=2σ (I)]
R1 = 0.0756, wR2 = 0.1785
Final R indexes [all data]
R1 = 0.0782, wR2 = 0.1799
-3
Largest diff. peak/hole / e Å 1.13/-0.79
38
1969708
C41H38.5F12N6O1.25P2Ru
1026.29
183(1)
triclinic
P-1
12.8029(3)
13.1575(2)
16.2010(4)
79.9877(16)
75.692(2)
62.241(2)
2334.63(10)
2
1.460
4.143
1037.0
0.39 × 0.15 × 0.03
CuKα (λ = 1.54184)
7.6 to 149.0
-15 ≤ h ≤ 15, -16 ≤ k ≤ 15, -20 ≤ l ≤ 20
44520
9539 [Rint = 0.0221, Rsigma = 0.0130]
9539/86/627
1.089
R1 = 0.0491, wR2 = 0.1495
R1 = 0.0523, wR2 = 0.1562
1.36/-0.35
Table S9. Crystal data and structure refinement parameters for 3.
3
CCDC number
Empirical formula
Formula weight
Temperature/K
Crystal system
Space group
a/Å
b/Å
c/Å
α/°
β/°
γ/°
Volume/Å3
Z
ρcalcg/cm3
μ/mm-1
F(000)
Crystal size/mm3
Radiation
2Θ range for data collection/°
Index ranges
Reflections collected
Independent reflections
Data/restraints/parameters
Goodness-of-fit on F2
Final R indexes [I>=2σ (I)]
Final R indexes [all data]
Largest diff. peak/hole / e Å-3
1969710
C38H28Br2F12N8P2Ru
1147.51
183(1)
triclinic
P-1
11.4219(3)
12.3760(3)
15.0464(4)
90.834(2)
98.147(2)
101.020(2)
2064.73(10)
2
1.846
2.488
1128.0
0.29 × 0.25 × 0.17
MoKα (λ = 0.71073)
4.42 to 55.75
-15 ≤ h ≤ 15, -16 ≤ k ≤ 16, -19 ≤ l ≤ 19
38483
9850 [Rint = 0.0490, Rsigma = 0.0378]
9850/312/643
1.031
R1 = 0.0398, wR2 = 0.1020
R1 = 0.0488, wR2 = 0.1096
0.79/-0.61
39
(a)
Compound 6
RDCT
= 1.382
(b)
RDCT
= 1.063
RDCT
= 1.505
Compound 7
RDCT
= 3.069
Figure S18. Difference density plots calculated between ES and GS (top row) computed
for the first vertical transition and the first bright state MLCT transition of 6 (a) and 7 (b).
For 7 both transitions are of MLCT type while the first one of 6 (a) is an inter-ligand
charge transfer π-π* transition. Yellow regions are characterized by an increase in density
upon excitation while blue ones show a decrease in electron density. The barycenters are
depicted as spheres (bottom rows) and the corresponding distances of charge transfer
RDCT (in A) are stated above. Atoms color scheme: C - green; H - white; N - blue; O - red, Ru
- brown.
40
Table S10. Spectroscopic properties of complexes 1-7 in CH3CN at room temperature.
1
2
3
UV/Vis Absorption
Emission
λ [nm] (ε [M‐1 cm‐1 × 103])
λem [nm]
200 (73.2), 225 (64.3), 264 (86.5),
284 (44.1), 446 (15.0)
202 (77.9), 222 (61.5), 264 (81.7),
280 (43.9), 421 (12.8), 449 (13.9)
201 (72.9), 223 (91.0), 263 (95.2),
289 (45.1), 388 (11.5), 441 (14.8)
Lifetime [ns]
Φem
Air sat.
degasse
d
600
0.027
130
766
606
0.050
110
918
645
0.014
207
617
654
0.020
326
1387
75
339
161
1096
55
312
201 (100.1), 223 (91.3), 263 (105.8),
4
308 (28.2), 386 (13.8), 438 (16.7),
441 (16.8)
5
6
7
201 (89.3), 224 (81.2), 265 (91.1),
703
379 (25.6), 458 (23.1)
192 (183.4), 279 (126.3), 441 (23.2),
457 (23.2)
192 (168.8), 280 (102.5), 371 (35.0),
465 (30.1)
41
623
694
<0.00
1
0.021
<0.00
1
Figure S19. Measured UV/Vis spectra of the complexes 1‐7 in CH3CN.
Figure S20. Normalised emission spectra of the complexes 1‐7 in CH3CN.
42
Figure S21. Lifetime spectra of the complexes 1 in aerated (above) and degassed
(below) CH3CN.
43
Figure S22. Lifetime spectra of the complexes 2 in aerated (above) and degassed
(below) CH3CN.
44
Figure S23. Lifetime spectra of the complexes 3 in aerated (above) and degassed
(below) CH3CN.
45
Figure S24. Lifetime spectra of the complexes 4 in aerated (above) and degassed
(below) CH3CN.
46
Figure S25. Lifetime spectra of the complexes 5 in aerated (above) and degassed
(below) CH3CN.
47
Figure S26. Lifetime spectra of the complexes 6 in aerated (above) and degassed
(below) CH3CN.
48
Figure S27. Lifetime spectra of the complexes 7 in aerated (above) and degassed
(below) CH3CN.
49
Table S11. Singlet oxygen quantum yields (Φ(1O2)) in CH3CN and aqueous solution
determined by direct and indirect methods by excitation at 450 nm. Average of three
independent measurements, ±10%.
Compound
CH3CN
CH3CN
D2O
PBS
Direct
Indirect
Direct
indirect
1
0.57
0.54
0.27
0.36
2
0.69
0.53
0.31
0.34
3
0.55
0.56
n.d.
0.21
4
0.62
0.59
0.25
0.26
5
0.24
0.30
n.d.
0.21
6
0.61
0.63
n.d.
0.05
7
0.22
0.35
n.d.
0.07
n.d. = not determinable, Φ(1O2) <0.20.
Figure S28. 1H NMR spectrum of 1 in DMSO-d6 after preparation (green) and 7 days (red).
50
Figure S29. 1H NMR spectrum of 2 in DMSO-d6 after preparation (green) and 7 days (red).
Figure S30. 1H NMR spectrum of 3 in DMSO-d6 after preparation (green) and 7 days (red).
51
Figure S31. 1H NMR spectrum of 4 in DMSO-d6 after preparation (green) and 7 days (red).
52
Figure S32. 1H NMR spectrum of 5 in DMSO-d6 after preparation (green), 1 day (olive), 2
days (blue) and 7 days (red).
53
Figure S33. 1H NMR spectrum of 6 in DMSO-d6 after preparation (green) and 7 days (red).
54
Figure S34. 1H NMR spectrum of 7 in DMSO-d6 after preparation (green), 1 day (olive), 2
days (blue) and 7 days (red).
55
Caffeine
48 h
Figure S35. HPLC chromatogram (Method M1) of Caffeine (internal standard) and 1 after
48 h incubation in human pooled plasma.
Caffeine
48 h
Figure S36. HPLC chromatogram (Method M1) of Caffeine (internal standard) and 2
after 48 h incubation in human pooled plasma.
Caffeine
48 h
Figure S37. HPLC chromatogram (Method M1) of Caffeine (internal standard) and 3 after
48 h incubation in human pooled plasma.
56
Caffeine
48 h
Figure S38. HPLC chromatogram (Method M1) of Caffeine (internal standard) and 4 after
48 h incubation in human pooled plasma.
Caffeine
0h
4h
12 h
24 h
48 h
Figure S39. HPLC chromatogram (Method M2) of Caffeine (internal standard) and 5 after
0 h, 4 h, 12 h, 24 h and 48 h incubation in human pooled plasma.
57
Caffeine
48 h
Figure S40. HPLC chromatogram (Method M1) of Caffeine (internal standard) and 6 after
48 h incubation in human pooled plasma.
Caffeine
0h
4h
12 h
24 h
48 h
Figure S41. HPLC chromatogram (Method M2) of Caffeine (internal standard) and 7
after 0 h, 4 h, 12 h, 24 h and 48 h incubation in human pooled plasma.
58
Figure S42. Temporal change of the UV/Vis spectra of [Ru(bipy)3]Cl2 by irradiation at
450 nm in CH3CN.
Figure S43. Temporal change of the UV/Vis spectra of complex 1 by irradiation at
450 nm in CH3CN.
59
Figure S44. Temporal change of the UV/Vis spectra of complex 2 by irradiation at 450
nm in CH3CN.
Figure S45. Temporal change of the UV/Vis spectra of complex 3 by irradiation at
450 nm in CH3CN.
60
Figure S46. Temporal change of the UV/Vis spectra of complex 4 by irradiation at 450
nm in CH3CN.
Figure S47. Temporal change of the UV/Vis spectra of complex 5 by irradiation at 450
nm in CH3CN.
61
Figure S48. Temporal change of the UV/Vis spectra of complex 6 by irradiation at 450
nm in CH3CN.
Figure S49. Temporal change of the UV/Vis spectra of complex 7 by irradiation at
450 nm in CH3CN.
62
Figure S50. Temporal change of the UV/Vis spectra of Protoporphyrin IX by irradiation
at 450 nm in CH3CN.
Table S12. Distribution coefficients of 1-7 between an organic octanol and aqueous
phosphate buffer saline phase.
Compound
logP
1
+0.2 ± 0.2
2
+0.3 ± 0.2
3
+0.4 ± 0.3
4
+0.2 ± 0.2
5
+0.7 ± 0.3
6
+1.4 ± 0.3
7
+1.7 ± 0.2
63
Figure S51. Comparison of the cellular uptake of complexes 1–7 after 4 h incubation in
HeLa cells.
Figure 52. Time-dependent accumulation of complex 6 (14 µM) in HeLa cell line. DNA
visualised by NucBlue staining, mitochondria visualised using Mitotracker Green FM
(100 nm), complex 6 shown in red. Scale bar, 20 µm.
64
Figure S53. Plate arrangement for Seahorse Mito Stress and Glycolysis Stress
experiments.
Figure S54. Oxygen consumption rates and different respiration parameters in CT-26
cells alone or after treatment with various test compounds.
65
Figure S55. Extracellular acidification rates and different glycolysis parameters in CT-26
cells alone or after treatment with various test compounds.
66
REFERENCES
1.
2.
3.
4.
5.
6.
7.
8.
9.
10.
11.
12.
13.
14.
15.
16.
17.
18.
19.
20.
21.
22.
23.
24.
25.
26.
M. J. Frisch et. al., Journal, 2017.
T. H. Dunning, Jr. and P. J. Hay, in Modern Theoretical Chemistry, ed. H. F.
Schaefer III, Plenum, New York, 1977, vol. 3, pp. 1-28.
W. J. Hehre, R. Ditchfield and J. A. Pople, The Journal of Chemical Physics,
1972, 56, 2257-2261.
P. C. Hariharan and J. A. Pople, Theoretica Chimica Acta, 1973, 28, 213-222.
A. Klamt, C. Moya and J. Palomar, J Chem Theory Comput, 2015, 11, 42204225.
A. D. Becke, The Journal of Chemical Physics, 1993, 98, 5648-5652.
C. Ullrich, Time-Dependent Density-Functional Theory: Concepts and
Applications, Oxford University Press, Oxford, 2012.
T. Le Bahers, C. Adamo and I. Ciofini, J Chem Theory Comput, 2011, 7, 24982506.
F. Maschietto, M. Campetella, M. J. Frisch, G. Scalmani, C. Adamo and I.
Ciofini, Journal of Computational Chemistry, 2018, 39, 735-742.
B. Sullivan, D. Salmon and T. Meyer, Inorg. Chem., 1978, 17, 3334-3341.
A. Duong, T. Maris, O. Lebel and J. D. Wuest, The Journal of organic chemistry,
2011, 76, 1333-1341.
O. Maury, J.-P. Guégan, T. Renouard, A. Hilton, P. Dupau, N. Sandon, L.
Toupet and H. Le Bozec, New J. Chem., 2001, 25, 1553-1566.
G. Crosby and W. Elfring Jr, The Journal of Physical Chemistry, 1976, 80, 22062211.
W. E. Jones Jr, R. A. Smith, M. T. Abramo, M. D. Williams and J. Van Houten,
Inorg. Chem., 1989, 28, 2281-2285.
O. Mazuryk, K. Magiera, B. Rys, F. Suzenet, C. Kieda and M. Brindell, JBIC
Journal of Biological Inorganic Chemistry, 2014, 19, 1305-1316.
R. Clark and J. Reid, Acta Crystallogr. Sect. A: Found. Crystallogr., 1995, 51,
887-897.
Rigaku Oxford Diffraction, 2015.
A. OLEX, L.J. Bourhis, R. J. Gildea, J. A. K. Howard, H. Puschmann, J. Appl.
Crystallogr, 2009, 42, 339-341.
G. M. Sheldrick, Acta Crystallographica Section A: Foundations and Advances,
2015, 71, 3-8.
G. M. Sheldrick, Acta Crystallographica Section C: Structural Chemistry, 2015,
71, 3-8.
A. L. Spek, Acta Crystallographica Section C: Structural Chemistry, 2015, 71,
9-18.
K. Nakamaru, Bull. Chem. Soc. Jpn., 1982, 55, 1639-1640.
I. E. Kochevar and R. W. Redmond, in Methods Enzymol., Academic Press
2000, vol. 319, pp. 20-28.
D. Garcìa-Fresnadillo, Y. Georgiadou, G. Orellana, A. M. Braun and E. Oliveros,
Helv. Chim. Acta, 1996, 79, 1222-1238.
S. J. Bruce, I. Tavazzi, V. r. Parisod, S. Rezzi, S. Kochhar and P. A. Guy, Anal.
Chem., 2009, 81, 3285-3296.
J. Schindelin, I. Arganda-Carreras, E. Frise, V. Kaynig, M. Longair, T. Pietzsch,
S. Preibisch, C. Rueden, S. Saalfeld, B. Schmid, J.-Y. Tinevez, D. J. White, V.
Hartenstein, K. Eliceiri, P. Tomancak and A. Cardona, Nat. Methods, 2012, 9,
676-682.
67
SI_ChemRxiv.pdf (5.38 MiB)
view on ChemRxiv
download file