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Dual FGFR-targeting and pH-activatable ruthenium-peptide conjugates for targeted therapy of breast cancer.
Dalton
Transactions
An international journal of inorganic chemistry
rsc.li/dalton
ISSN 1477-9226
PAPER
Tânia S. Morais et al.
Dual FGFR-targeting and pH-activatable ruthenium–peptide
conjugates for targeted therapy of breast cancer
Volume 53
Number 18
14 May 2024
Pages 7645-8054
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Transactions
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PAPER
Cite this: Dalton Trans., 2024, 53,
7682
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Dual FGFR-targeting and pH-activatable
ruthenium–peptide conjugates for targeted
therapy of breast cancer†
João Franco Machado, a,b Marco Sá,‡a Inês Pires,‡c Miguel Tarita da Silva,b
Fernanda Marques, b,d Jaime A. S. Coelho,a Filipa Mendes, b,d
M. Fátima M. Piedade,e,f Miguel Machuqueiro, c,e María Angeles Jiménez,
Maria Helena Garcia,a,e João D. G. Correia *b,d and Tânia S. Morais *a,e
g
Dysregulation of Fibroblast Growth Factor Receptors (FGFRs) signaling has been associated with breast
cancer, yet employing FGFR-targeted delivery systems to improve the efficacy of cytotoxic agents is still
sparsely exploited. Herein, we report four new bi-functional ruthenium–peptide conjugates (RuPCs) with
FGFR-targeting and pH-dependent releasing abilities, envisioning the selective delivery of cytotoxic Ru
complexes to FGFR(+)-breast cancer cells, and controlled activation at the acidic tumoral microenvironment.
The antiproliferative potential of the RuPCs and free Ru complexes was evaluated in four breast cancer cell
lines with different FGFR expression levels (SKBR-3, MDA-MB-134-VI, MCF-7, and MDA-MB-231) and in
human dermal fibroblasts (HDF), at pH 6.8 and pH 7.4 aimed at mimicking the tumor microenvironment and
normal tissues/bloodstream pHs, respectively. The RuPCs showed higher cytotoxicity in cells with higher level
of FGFR expression at acidic pH. Additionally, RuPCs showed up to 6-fold higher activity in the FGFR(+) breast
cancer lines compared to the normal cell line. The release profile of Ru complexes from RuPCs corroborates
the antiproliferative effects observed. Remarkably, the cytotoxicity and releasing ability of RuPCs were shown
Received 20th February 2024,
Accepted 25th March 2024
to be strongly dependent on the conjugation of the peptide position in the Ru complex. Complementary
DOI: 10.1039/d4dt00497c
molecular dynamic simulations and computational calculations were performed to help interpret these
findings at the molecular level. In summary, we identified a lead bi-functional RuPC that holds strong potential
rsc.li/dalton
as a FGFR-targeted chemotherapeutic agent.
Introduction
a
Centro de Química Estrutural, Institute of Molecular Sciences, Faculdade de
Ciências, Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal.
E-mail: tsmorais@fc.ul.pt
b
Centro de Ciências e Tecnologias Nucleares, Instituto Superior Técnico,
Universidade de Lisboa, Estrada Nacional 10 (km 139, 7), 2695-066 Bobadela LRS,
Portugal. E-mail: jgalamba@ctn.tecnico.ulisboa.pt
c
BioISI – Biosystems & Integrative Sciences Institute, Faculdade de Ciências,
Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal
d
Departamento de Engenharia e Ciências Nucleares, Instituto Superior Técnico,
Universidade de Lisboa, Estrada Nacional 10 (km 139, 7), 2695-066 Bobadela LRS,
Portugal
e
Departamento de Química e Bioquímica, Faculdade de Ciências, Universidade de
Lisboa, Campo Grande, 1749-016 Lisboa, Portugal
f
Centro de Química Estrutural, Institute of Molecular Sciences, Instituto Superior
Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1049-001 Lisboa, Portugal
g
Institute of Physical Chemistry Blas Cabreras (IQF-CSIC), Serrano 119, E-28006
Madrid, Spain
† Electronic supplementary information (ESI) available. CCDC 2332935–2332937.
For ESI and crystallographic data in CIF or other electronic format see DOI:
https://doi.org/10.1039/d4dt00497c
‡ Both authors contributed equally to the work.
7682 | Dalton Trans., 2024, 53, 7682–7693
Breast cancer remains the most predominantly diagnosed
cancer and the leading cause of female mortality worldwide,
corresponding to 15.5% of annual cancer deaths in women.1–3
Despite the great efforts on early diagnosis and treatment strategies, breast cancer recurrence and metastasis to the bones,
lungs, liver, and brain renders it incurable, with this being the
major reason for the current high mortality levels.4–7
Dysregulation of Fibroblast Growth Factor Receptor (FGFR)
signaling has been associated with the development and progression of various types of cancer, including breast cancer.
Therefore, in recent years, it has emerged as a promising
therapeutic target.8–10 FGFRs are a family of receptor tyrosine
kinases that play key roles in cell growth, survival, angiogenesis, differentiation, and cell repair.8–12 Aberrant activation
or overexpression of FGFRs has been implicated in breast
cancer pathogenesis, particularly in aggressive subtypes,
making it a marker of poor prognosis, as it is associated with
the occurrence of metastases, early relapse, and resistance to
standard therapy.8,13,14 The observation that overexpression of
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FGFRs by breast cancer cells comparatively to non-tumorigenic
ones has paved the way for the exploration of FGFR inhibitors as
potential targeted therapeutic agents.8–10,12 Although numerous
ligands with high affinity and selectivity for FGFR, mainly peptides and small molecules, have reached clinical trials for several
types of cancer,9,12,15 none of them have shown to be sufficiently
effective for treating breast cancer.8,13,15,16 FGFRs as components
of the tumor microenvironment (TME) may also be used as molecular targets for drug delivery strategies, enhancing the precision
and efficacy of anticancer drugs. Nonetheless, surprisingly, the
use of specific FGFR ligands as delivery vectors for targeted anticancer therapy is scarcely explored. Indeed, only one antibody–
drug conjugate was reported as a promising FGFR-targeted drug
for advanced cancers, such as breast, colon, esophagus, liver, and
pancreas, reaching phase I clinical trials.17
Several approaches for targeted delivery of metal complexes
to tumors have been developed based on exploiting the unique
molecular features of tumors.18–26 In general, a targeted drug
delivery system (DDS) comprises a tumor-recognizing moiety
and a cytotoxic moiety, both connected directly or through a
suitable linker to form a conjugate.27–30 Among the various
type of targeting molecules explored in the past few years, peptides arose as one of the most promising as they can bind to
their targets with high specificity and affinity, presenting low
toxicity and immunogenicity which makes them good candidates for tumor-targeted DDS. Many peptide drug-conjugates
have shown high potential in cancer chemotherapy,23,31–38 in
particular those systems containing metal complexes (e.g. Ru,
Au, Fe, Co, Ir, and Re) as cytotoxic agents.19,39–44
We have previously designed a tumor-targeting DDS based
on the ruthenium–cyclopentadienyl complex [RuCp(PPh3)(2,2′bipy)][CF3SO3] (TM34) combined with FGFR-targeting pep-
Paper
tides. TM34 is highly potent in vitro against several cancer cell
lines, in particular, breast cancer cells (MFC-7 and
MDA-MB-231),45–48 and the peptide was envisaged as the
vector to selectively deliver paved the way for the exploration of
FGFR inhibitors as potential targeted therapeutic agents.8–10,12
Although numerous ligands TM34 to FGFR(+) breast cancer
cells, thus sparing thus the non-tumorigenic tissues that have
lower intrinsic levels of FGFR expression.49 These tumor-targeting ruthenium–peptide conjugates (RuPCs) were shown to be
more cytotoxic in FGFR(+) breast cancer cells than in FGFR(−)
cells. However, peptide conjugation also led to a considerable
decrease in overall cytotoxicity compared to the parent
complex TM34, limiting their further use.
Herein, to improve the ability of these RuPCs to target and
kill FGFR(+) breast cancer cells, we propose a novel strategy
that combines a TM34 derivative complex with an FGFR-targeting peptide connected through a pH-responsive linker. The
latter allows selective and controlled release of the Ru complex
in its active form only at the target, triggered by the acidic pH
of TME, boosting not only its selectivity but also its therapeutic
activity. A schematic representation of the design of this
rationale approach is illustrated in Fig. 1.
The four new RuPCs proposed differ in the conjugation
position and/or in the way the hydrazone, a well-known acidlabile moiety for prodrugs, was installed. In this study, four
pH-responsive ruthenium–peptide conjugates, named RuPC1–
RuPC4 (Fig. 2), were developed, each composed of 3 building
blocks, namely a Ru complex (cytotoxic agent), an FGFR-targeting peptide (targeting agent) and a hydrazone linker ( pH-sensitive linker) formed by the reaction of the two previously mentioned moieties. The hydrazone linker can be obtained by the
reaction between a ketone-derivatized Ru complex (cytotoxic
Fig. 1 A conceptual overview of bi-functional ruthenium–peptide conjugates (RuPCs) based on targeting FGFR and a controlled release of the
ruthenium active species at the acidic tumor microenvironment.
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Fig. 2 Chemical structures of (A) ruthenium–peptide conjugates (RuPC1–4), (B) active ruthenium complexes (1, 4, 6, and 7) and (C) peptides (P1
and P2).
agent) and a hydrazide-containing peptide (delivery agent) or
vice versa. Herein, we present the synthesis and characterization of new organometallic Ru complexes functionalized with
ketone and hydrazide groups on the Cp or bipyridine coligands (1, 4, 6, and 7; Fig. 2). These two co-ligands had
already been identified in our previous computational studies
as the most suitable for derivatization and peptide conjugation
without affecting the complex ability to interact with the cell
membrane, a key process for the activity of TM34.47,49 As
regards the FGFR-targeting moiety, we have developed two peptides based on the sequence VSPPLTLGQLLS, functionalized
on the N-terminus with a 1,4-dioxo-pentanyl ( peptide P1) or a
(1-isobutyl)-4-hydrazide ( peptide P2) groups, to allow the conjugation to the Ru complex. This sequence is described to
bind with high affinity and specificity to the extracellular
domain of FGFR and is not toxic to the tumoral cells, being
used in this approach only as a carrier.49,50
The effect of metal conjugation on the 3-dimensional structure of the peptide was evaluated by NMR spectroscopy
through determination of the conformations of P1 and RuPC1
in aqueous solution. The dual effect of FGFR targeting and
pH-activation of the new RuPC was evaluated in vitro in a
panel of breast cancer cell lines: SKBR-3, MDA-MB-134-VI,
MCF-7, and MDA-MB-231 with different FGFR expression
levels, at pH 6.8 and pH 7.4 that mimic the tumor microenvironment and normal tissues/bloodstream, respectively, and in
normal human dermal fibroblasts at pH 7.4. The ability of the
7684 | Dalton Trans., 2024, 53, 7682–7693
RuPCs to release the organometallic complexes in aqueous
solutions at pH 6.8 or pH 7.4 was also evaluated by RP-HPLC.
Our findings suggest that the cytotoxicity and the release are
strongly dependent on the position of the conjugation of the
Ru complex to the peptide and the way that the hydrazone is
constructed. Also, we identified a lead compound that holds
the Ru complexes functionalized with ketone and hydrazide
groups on the Cp or bipyridine co-ligands (1, 4, 6, and 7;
Fig. 2). Also, we identified a lead compound that holds the
potential to be further evaluated as a FGFR-targeted chemotherapeutic agent. The strategy presented herein holds
promise for a new targeted therapeutic approach for the treatment of FGFR-related cancers.
Results and discussion
Synthesis and characterization
Two new monofunctionalized bipyridine ligands were synthesized through a Stille coupling reaction between 4-substituted- 2-(tributylstannyl)pyridine and 2-bromopyridine.
The precursor [Ru(η5-C5H4COCH3)(PPh3)2Cl] was obtained
by reaction of sodium acetylcyclopentadienide with [Ru
(PPh3)3Cl2] in tetrahydrofuran. The final ketone/ester-derived
complexes were obtained by heating, under reflux, the respective precursor complex with the corresponding bipyridine
ligand in methanol. The hydrazide-derived complexes were
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prepared by reaction of the ester precursors with a large excess
of hydrazine in ethanol under reflux. Detailed procedures,
reaction schemes, and characterizations are provided in the
ESI.† The structures of all complexes were confirmed by multinuclear (1H, 13C, 31P) NMR, FT-IR, and UV-vis spectroscopies
and ESI-MS. The purity of all complexes was assessed by percentual elemental analysis, and HPLC (only for compounds 1,
4, and 6). Single crystals of complexes 1, 3 (used as the precursor of 4), and 4 suitable for SCXRD were obtained by diffusion
of diethyl ether in a dichloromethane solution of each
complex. Fig. 3 shows the molecular structures of the compounds and the selected bond lengths and angles are provided
in ESI (Tables S2 and S3†).
These monocyclopentadienyl ruthenium complexes present
the usual “three-legged piano stool” geometry around the metal
as confirmed by X–M–P angles close to 90° (X = N or Cl), with the
remaining Cp–M–X (X = N or P) angles between 121.370(19)° and
130.16(13)°. Complexes 1 and 4 crystallize in the monoclinic
crystal system in the P21/c and P21/n space groups respectively
ˉ
and complex 3 crystallizes the triclinic crystal system in the P1
space group. For complexes 1 and 4 the asymmetric unit consists
of a cationic complex and CF3SO3 anion, while for compound 3
the asymmetric unit consists of the neutral complex.
Furthermore, the stability of complexes 1, 4, 6, and 7 was
evaluated in aqueous and organic solutions by UV-vis spectroscopy and NMR to assess their suitability for further conjugation to peptides and biological studies. The assays by UV-vis
spectroscopy were performed in 100% DMSO (organic solution) and 5% DMSO/95% cell culture medium DMEM +
GlutaMAX-I (aqueous solution) at room temperature. The NMR
experiments were performed in 80% D2O/20% DMSO-d6 at
room temperature by 1H NMR spectroscopy over 48 h. All complexes showed to be stable under these conditions, as the
acquired electronic spectra did not display any significant variation over time regarding the number, type, shape, nor
maximum absorbance of the bands (ΔAmax < 8% for π → π*
and MLCT bands), or the number, chemical shift, integration,
or multiplicity of the 1H resonances (Fig. S61–S71†).
The evaluation of the lipophilicity of a complex intended to
be used for biomedical applications is among the primary
Paper
steps of the drug development process. This important
physicochemical property has a considerable impact on the
pharmacokinetics and pharmacodynamics profiles of the
complex, as well as a strong influence on its drug formulation.
Particularly, lipophilicity influences the ability of the complex
to interact with drug targets and cross-cell membranes, as well
as its solubility, tissue permeability, cytotoxicity/bioactivity,
and general toxicity.51 The partition coefficients in n-octanol/
water of complexes 1, 4, 6, and 7 as well as the reference
complex [Ru(η5-C5H5)(PPh3)(2,2′-bipy)][CF3SO3] (TM34), were
estimated by the shake-flask method.52 Compared to TM34,
which showed moderate lipophilicity (log P = 1.10 ± 0.05), all
the derivatizations led to a slight decrease of the lipophilicity
(1: log P = 0.43 ± 0.01; 4: log P = 0.25 ± 0.02 and 7: log P = 0.83
± 0.03), with the exception for compound 6 (log P = 1.55 ±
0.06), with the bipyridine ligand functionalized with a hydrazide group, that is slightly more lipophilic than TM34.
The bioavailability of small metallodrugs to tumor sites is
often limited due to their low efficiency in reaching selectively
the tumor site, and therefore attaching specific peptides could
enhance drug accumulation at the target.18,53,54 The syntheses
of the novel pH-responsive Ru–peptide conjugates (RuPC1–
RuPC4) comprised three main steps: (i) preparation of the
organometallic complexes 1, 4, 6, and 7; (ii) synthesis and
purification of the FGFR-targeting peptides derived from
VSPPLTLGQLLS;55–57 where the N-terminus was functionalized
with a 1,4-dioxo-pentanyl ( peptide P1) or a (1-oxobutyl)-4hydrazide ( peptide P2) group; and (iii) conjugation of each
organometallic complex with the respective peptide through
the formation of a hydrazone bond. The peptides were prepared on a rink amide resin by ultrasound-assisted solid-phase
peptide synthesis (US-SPPS), according to our previously
reported methodology.50 Peptide P1 was N-functionalized with
a ketone group by treating the resin with levulinic acid.
Analogously, N-derivatization of P2 with the hydrazide group
was performed in two steps, first by treating the resin with succinic anhydride, and then by reaction of the product with
Fmoc-hydrazine, followed by final Fmoc deprotection. It is
important to mention that treating the resin with an excess of
succinic anhydride or for long periods, during the first step,
Fig. 3 Molecular diagrams for (A) [Ru(η5-C5H4CONHNH2)(PPh3)(2,2’-bipy)]+ (1), (B) [Ru(η5-C5H4COCH3)(PPh3)2Cl] (3) and (C) [Ru(η5-C5H4COCH3)
(PPh3)(2,2’-bipy)]+ (4).
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led to the polymerization of P2 through the formation of the
respective poly succinate ester. After final deprotection,
peptide cleavage, and purification procedures both peptides
were obtained with C-terminal amide with >98% purity. The
RuPCs were obtained in high purity (>97%) upon reaction of the
hydrazide-derived complex with the respective ketone-derived
peptide, or vice versa (Fig. 2A). Interestingly, RuPC1, RuPC3, and
RuPC4 were obtained as a 1 : 1 mixture of E/Z-hydrazone
isomers, whereas for RuPC2 was obtained as a single isomer.
P1, P2, RuPC1–RuPC4 were characterized by analytical RP-HPLC
and ESI-MS, which results corroborate the proposed structures.
The synthetic procedures (peptides and RuPCs), reaction
schemes, and characterizations are provided in the ESI.†
The 3-dimensional conformation of a peptide can provide
insights
into
its
physicochemical
and
biological
properties.58–60 We determine the conformation of peptide P1
and the structural impact of the conjugation to the metal
(RuPC1) by NMR. The 2D 1H–1H-TOCSY spectrum of P1 exhibited a set of intense cross-peaks (Fig. S3A†), which corresponds
to the major species, as well as some weak cross-peaks. This is
common for Pro-containing peptides due to the cis–trans isomerization of the X-Pro bonds.61,62 Since the sequence of
peptide P1 contains two Pro residues, up to four species could
be present in solution, i.e., trans–trans, cis–trans, trans–cis, and
cis–cis. We observed that the two Pro residues are trans in the
major species since the differences between the chemical
shifts of the 13Cβ and 13Cγ carbons (Δβγ = δCβ − δCγ, ppm) are
small (Δβγ < 5 ppm).61,62 Sequential NOEs between the Hα
proton of Ser2 and the Hδδ′ protons of Pro3 and between the
Hα proton of Pro3 and the Hδδ′ protons of Pro4 confirm that
the rotamer state of both X-Pro bonds is trans. Concerning the
minor species, only some signals belonging to V1 and S2 of
one of them could be assigned. Based on the intensities of
equivalent cross-peaks, the percentages of major (trans–trans)
and minor species are 90 and 10%, respectively. The NMR
spectra of conjugate RuPC1 showed several sets of cross-peaks
for residues Val1, Ser2, Pro3, and Pro4, two of the sets of
similar intensities (their relative percentages are 47 ± 4 and 53
± 4 according to the intensities of 19 equivalent cross-peaks).
In the 2D 1H,1H-TOCSY spectrum (Fig. S3B†), four 1Hα–1HN
cross-peaks are observed for Val1. According to the intensities
of these Val1 cross-peaks, the percentages are 47, 40, 9 and
4%. Very likely the two major species correspond to isomers at
the conjugate moieties, whereas the minor species will correspond to each of those isomers and a cis Pro rotamer. As in the
free peptide, based on the small value of the difference
between the chemical shifts of the 13Cb and 13Cg carbons of
the two Pro residues indicates that the two X-Pro bonds in the
two major species are trans. We also analyzed whether the
major species of peptide P1 and conjugate RuPC1 form some
preferred conformation, by examining the plots of 1Hα and
13
Cα chemical shift deviations (Δδ = δobserved − δrandom coil,
ppm) as a function of peptide sequence (Fig. 4). It is noticeable
that the profiles displayed by P1 and RuPC1 are almost identical, which indicates that conjugation does not affect the conformational behavior of the peptide moiety. Excluding the Pro-
7686 | Dalton Trans., 2024, 53, 7682–7693
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1
Fig. 4 Chemical
shift
deviations
for
the
Ha
protons
13
RC
d
;
ppm
and
C
carbons
DdHa ¼ dobserved
a
Ha
Ha
RC
DdCa ¼ dobserved
d
;
ppm
for
the
major
species
of
P1 (red bars) and
Ca
Ca
RC
RuPC1 (black and grey bars) as a function of sequence. dRC
Ha and dCa
were taken from ref. 63. Pro-preceding residues are underlined. The two
dashed lines indicate the random coil range (RC). Top cartoon indicates
the secondary structure; helix is shown as a red cylinder.
preceding residues, which exhibit their characteristic large
values,63 most chemical shift deviations are within the random
coil range, which points out to mainly disordered peptides.
However, the stretch of consecutive negative ΔδHα and positive
ΔδCα displayed by residues 7–10 suggests low populated helical
conformations (estimated helix percentage is about 16%). The
complete assignments are provided in the ESI.†
Cytotoxic activity in FGFR-positive/negative breast cancer cells
Since the RuPCs were designed as a bi-functional system with
FGFR targeting and pH-activation, we envisioned that treatment of FGFR(+)-cancer cells at an acidic pH could lead to a
higher inhibition of proliferation. Therefore, we evaluated the
cytotoxic activities of the new conjugates, complexes, and peptides in a panel of breast cancer cell lines with different FGFR
expression levels, namely SKBR-3, MDA-MB-134-VI, MCF-7,
and MDA-MB-231, at pH 6.8 and pH 7.4 that mimics the
tumor microenvironment and normal tissues/blood-stream,
respectively.64 SKBR-3 and MDA-MB-231 cell lines are metastatic breast cancer models, while MCF-7 and MDA-MB-134-VI
are hormone-dependent breast cancer models.65–67 According
to the literature, SKBR-3 and MDA-MB-134-VI had the highest
level of FGFR expression, followed by MCF-7, while
MDA-MB-231 has no expression.68,69 For this purpose, the conjugates, and free complexes, were previously incubated in
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Table 1 IC50 values (μM) of the conjugates (RuPC1–RuPC4) and the free Ru complexes (1, 4, 6 and 7) for breast cancer cells with different FGFR
expression levels: MDAMB134-VI(++), SKBR-3(++), MFC-7(+) and MDA-MB-231(-)
IC50 (μM) 48 h
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MDA-MB-134-VI
SKBR-3
MCF-7
MDA-MB-231
Compounds
pH 6.8
pH 7.4
pH 6.8
pH 7.4
pH 6.8
pH 7.4
pH 6.8
pH 7.4
1
RuPC1
4
RuPC2
6
RuPC3
7
RuPC4
Peptides
25 ± 5.3
7.4 ± 1.4
10.2 ± 3.8
6.2 ± 1.9
19.8 ± 2.8
37.4 ± 6.8
6.4 ± 1.4
17.1 ± 2.3
>100
23 ± 5.0
17.4 ± 5.0
12.8 ± 4.1
5.9 ± 1.9
21.2 ± 2.9
26.7 ± 6.2
6.2 ± 1.4
4.1 ± 1.1
45 ± 12
7.9 ± 1.7
7.5 ± 1.9
3.3 ± 0.7
7.1 ± 1.2
11.4 ± 2.1
3.9 ± 1.3
21.8 ± 5.5
>100
40 ± 11
14 ± 3.5
7.5 ± 1.9
4.3 ± 0.8
6.5 ± 1.2
10.6 ± 2.2
2.7 ± 0.6
3.9 ± 0.8
12 ± 2.0
2.1 ± 0.7
2.5 ± 0.6
1.1 ± 0.3
4.3 ± 0.9
10.4 ± 3.3
1.9 ± 0.4
9.7 ± 1.9
>100
12 ± 2.0
8.5 ± 2.3
3.0 ± 0.6
1.7 ± 0.4
3.1 ± 0.5
9.5 ± 3.1
2.0 ± 0.4
2.4 ± 0.6
38 ± 8.2
12.9 ± 3.1
10.2 ± 1.3
4.0 ± 0.7
20 ± 3.2
36.9 ± 5.8
4.9 ± 1.0
47.7 ± 6.5
>100
34 ± 7.6
26.4 ± 9.8
11.3 ± 1.5
7.7 ± 2.5
20.3 ± 2.3
23.4 ± 3.4
3.9 ± 0.8
6.7 ± 1.2
DMSO/phosphate buffer solutions at pH 6.8 and 7.4 for 48 h,
before being diluted in cell medium and incubated with the
cell lines at different concentrations in the range 0.1–50 µM, to
determine the cellular viability after additional 48 h of incubation. An initial screening with the SKBR-3 and MDA-MB-134VI cell lines showed that both peptides P1 and P2 are not toxic
at the concentrations tested (100 µM; Table 1). In general, all
conjugates and free organometallic complexes are highly cytotoxic in all the tested cell lines, with IC50 values in the micromolar range (Table 1 and Fig. S4†). The cytotoxicity is strongly
dependent on the position of the conjugation of the peptide to
the Ru complex. In fact, when the peptide conjugation is on
the Cp ring the RuPCs are more cytotoxic than the free Ru
complexes, while the opposite effect was observed for RuPCs
conjugated via bipyridine ligand. As expected, except for
RuPC3, the IC50 of the conjugates is dependent on the FGFR
expression level and the pH value, while the activity of free
complexes does not correlate with any of these factors.
Conjugates RuPC1, RuPC2, and RuPC4 are up to 6 times
more active in FGFR-expressing cell lines than in the one that
does not overexpress it. This effect is particularly evident at pH
6.8 with the higher difference observed for RuPC1. On the contrary, for the respective free complexes there was no evident
correlation between the level of FGFR expression and their
cytotoxic activity. Thus, these data suggest a relevant role of
the peptide in the targeted delivery of the complexes to breast
cancer cells overexpressing this receptor.
Regarding the effect of pH, RuPC1 was up to 4-fold more
cytotoxic at pH 6.8, than at pH 7.4 in all cancer cell lines,
while for RuPC2 this effect was not observed. When the
peptide is conjugated to bipyridine, a different behavior is
observed. Unexpectedly, RuPC3 is more cytotoxic at pH 7.4
than 6.8, with this effect being more evident in MDA-MB-134VI and MDA-MB-231 cells. For RuPC4, at pH 7.4, this conjugate
showed a cytotoxic activity similar to that of free Ru complex 7
and at pH 6.8, a significant loss of activity of this conjugate
was observed in all cell lines studied, which was up to 7 times
lower than its activity at pH 7.4. The respective free complexes
did not show significant differences between the two pH
values tested.
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Regarding the free Ru organometallic complexes, it is
observed that compounds functionalized with a ketone group
are more cytotoxic than those containing a hydrazide group.
As observed for RuPCs, also the cytotoxicity of free complexes
is dependent on the position of the functionalization.
Since fibroblasts are cells present in all tissues of the
human body that naturally express FGFRs,70–74 to anticipate
possible adverse effects due to cytotoxicity in healthy tissues,
we evaluate the in vitro toxicity of the two most promising conjugates RuPC1 and RuPC2 and their respective free Ru complexes (1 and 4) in the human dermal fibroblasts (HDF) cell
line (Table 2). The free Ru complexes are more active in the
normal cell line when compared with all the breast cancer cell
lines (SI < 0.8), except for MCF-7. In the latter cell line,
complex 4 showed a selectivity index of 2, while for complex 1
the IC50 is in the same concentration range as in the normal
cell lines, which evidences the low intrinsic selectivity of free
complexes. However, after conjugation of the peptide, both
conjugates, as expected, are less active in normal cells than in
cancer cells (1.2 < SI < 7.3). The sole exception is RuPC2 in
MDA-MB-134-VI cells, where its cytotoxicity is in the same concentration range as in the normal cell (SI = 1.0). In fact, for the
other three cell lines, RuPC1 was shown to increase the selectivity of complex 1 between 4 and 10 times, whereas RuPC2 was
only 3 to 4 times more selective than the respective complex 4.
It is also noteworthy that both conjugates show up to 6-fold
higher SI values in the FGFR(+) breast cancer lines compared
to the FGFR(–) normal line.
Drug release behavior
To evaluate the ability of the RuPCs to release the active
organometallic complexes in aqueous solution, RuPC1–RuPC3
were treated with phosphate buffer solutions at pH 6.8 or pH
7.4. A small amount of acetonitrile (10%) was used as a cosolvent to fully solubilize the conjugates at the working concentration (0.5 mg mL−1). The release profiles were monitored
by HPLC over 50 hours. Interestingly, each of them presented a
different behavior. For RuPC1, at pH 6.8, the chromatographic
peak for the Ru–peptide conjugate continuously decreased as
the incubation time increased (Fig. 5A). Simultaneously, a pro-
Dalton Trans., 2024, 53, 7682–7693 | 7687
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Dalton Transactions
Table 2 IC50 values (μM) in the normal cell line HDF at pH 7.4 and selectivity index (SI) values calculated for conjugates RuPC1 and RuPC2, as well
as respective free complexes 1 and 4, referred to the IC50 of these compounds in the normal cell line HDF at pH 7.4 compared to their cytotoxicity
in the breast cancer cell lines SKBR-3, MDA-MB-134-VI, MCF-7, and MDA-MB-231 at pH 6.8
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SI (healthy pH 7.4/tumoral pH 6.8)
Compounds
IC50 (μM) HDF
HDF/SKBR-3
HDF/MDA-MB-134-VI
HDF/MDA-MB-231
HDF/MCF-7
1
RuPC1
4
RuPC2
10.1 ± 2
15.3 ± 3.5
4.4 ± 1.3
5.7 ± 1.4
0.2
1.9
0.6
1.7
0.4
2.1
0.4
0.9
0.3
1.2
0.4
1.4
0.8
7.3
1.8
5.2
portional increase of the signals of P1 and complex 1 was
observed over the same period. After 24 h, a new peak (rt =
14.1 min) appeared, which has been assigned to the complex
that results from the hydrolysis of 1 to a carboxylic acid [Ru(η5C5H4COOH)(PPh3)(2,2′-bipy)][CF3SO3] (TM281), previously
reported by us.49 Indeed, complex 1 was released from RuPC1
in an exponential-like way during the first 6 h (41%) (Fig. 5B).
With a prolonged incubation period, free complex 1 was continuously released, reaching 79% after 24 h, and an almost
complete release at 50 h (97%). These results suggest the successful hydrolysis of the conjugate into the respective free
peptide and complex in its active form, with a small amount of
it being later hydrolyzed to TM281. The hydrolysis of complex
1 to TM281, may in part explain the lower cytotoxicity of
complex 1, compared to complex 4, since TM281 has already
been shown to have a low cytotoxic potential.49 To be used as a
potential targeted therapy the drug delivery system should be
stable under non-tumoral conditions. Thus, at pH 7.4, a
similar behavior for RuPC1 was observed (Fig. 5A), but at a significantly lower rate of release. As shown in Fig. 5B, at the pH
of non-tumorigenic tissues, only a quarter part of complex 1
was released under a 50 h period following linear kinetics
(release rate at 24 h = 14% and 50 h = 26%), suggesting that
RuPC1 shows a pH-dependent controlled drug release profile
compatible with the desired application. Surprisingly, RuPC2,
which contains a mirrored hydrazone bond relative to that of
RuPC1, showed limited drug release ability under analogous
conditions. At both pH values, the chromatographic peak relative to this conjugate decreased very slowly, with a proportional
slow release of P2 and complex 4 (Fig. 5C). Indeed, from
Fig. 5D, we can observe that after the first 6 h only 6% of
complex 4 was released from RuPC2, achieving a plateau after
24 h (15% release), which did not significantly increase with
longer incubation time. Analogously, at pH 7.4, only a very
small amount (9%) of complex 4 was released within 50 h of
incubation. On the contrary, for RuPC3, with the peptide conjugated through the bipyridine ligand, a high release rate of
complex 6 was observed (Fig. 5E), to the same extent for both
pH values. For quantitative evaluation (Fig. 5F), a release of
60% was observed after 6 h, and after a prolonged incubation
period, free complex 6 was continuously released reaching ca.
100% after 50 h incubation. Meanwhile, a new peak with a
retention time of 11.8 min emerged and significantly intensified, which was identified by ESI-MS as the product from the
7688 | Dalton Trans., 2024, 53, 7682–7693
hydrolysis of complex 4 to the carboxylic acid derivatized
complex
–
[Ru(η5-C5H5)(PPh3)(2,2′-bipy-COOH)][CF3SO3]
( product not isolated). Unfortunately, it was not possible to
evaluate the release profile of the active complex 7 from RuPC4
since we could not find an analytical HPLC method capable of
eluting and separating the conjugate RuPC4, the free peptide
and complex 7. The pH-responsiveness of the conjugates can
explain the differences observed in the cytotoxic profile of each
RuPC and highlight the need for the complex to be released
from the conjugate, i.e., to be present in its active form and
increase its efficacy, as it was also reported for other drug
delivery systems.19,49 Indeed, whereas RuPC2 was only slightly
more active than complex 4 in the breast cancer cell lines,
RuPC1 showed to be significantly more active (up to 5-fold)
than the respective free complex 1 at pH 6.8. Thus, the overall
results indicate that RuPC1 has a profile adequate for the controlled release of the active organometallic complex at the
tumor site, whereas RuPC2 and RuPC3 do not.
To further understand the relative stability of RuPC1 and
RuPC2, we studied the hydrolysis of these hydrazones using
density functional theory at M06-2X/def2-TZVPP,SDD(Ru)//
M06-2X/6-31G(d,p), SDD(Ru) level of theory. We assumed that
the hydrolysis rate is mainly dependent on the proton affinity
(PA)75,76 and electrophilicity of the corresponding iminium
ions. The calculated PA (ΔPA is 1.0 kcal mol−1) and Fukui
indices f+ are greater in RuPC1 compared to RuPC2, suggesting
that RuPC1 is more basic and the corresponding iminium ion
more electrophilic than that of RuPC2. These results agree well
with the experimental observations and, together with similar
conclusions obtained for truncated model substrates (see
Fig. S6–S9†), suggest that alkyl hydrazones are more easily
hydrolyzed than aryl hydrazones.
Membrane interactions and permeability from MD
simulations
Computational approaches, in particular molecular dynamics
(MD) simulations, have been increasingly used to evaluate the
interaction of drugs with the cell membrane.77–79 The interaction of lead complexes 1 and 4 with a membrane model was
studied using MD simulations, to evaluate the impact of
specific chemical groups, introduced in the Cp ring (hydrazide
or acetyl groups, respectively), of the reference complex TM34,
in its mode of interaction with the cell membrane. In particular, their effects on the membrane insertion depth, preferred
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Paper
Fig. 5 pH dependent Ru complex release profiles under pH 6.8 (tumor microenvironment) and pH 7.4 (bloodstream/healthy tissues). Time course
of complexes 1, 4 and 6 release profile from RuPC1, RuPC2 and RuPC3, respectively, monitored by RP-HPLC at intervals: 0, 1, 2, 3, 4, 5,6, 24, and
48 h (A, C and E); percentage of complexes 1, 4 and 6 from RuPC1, RuPC2 and RuPC3, respectively (B, D and F).
orientation, and membrane permeation were studied, and a
possible correlation with the cytotoxic activities was evaluated.
We applied the same protocols to all compounds so that a
direct comparison between TM34 and its derivatives leads to a
significant error cancellation, hence providing a reliable
quantification of the studied effects. These two complexes are
representative of the two groups used to functionalize TM34
(hydrazide and ketone). To study the preferred partitioning
region and orientation of complexes 1 and 4, we performed
unrestrained MD simulations of each compound in the presence of a 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine
(POPC) bilayer membrane. In general, all complexes showed a
clear preference towards the membrane phase, similar to
TM34. They reached a stable insertion position just below the
average position of phosphorous atoms, within the initial
200–350 ns of simulation (Fig. 6A and S10†). Most structural
properties were equilibrated after these initial time segments
This journal is © The Royal Society of Chemistry 2024
(Fig. S11–S13†). None of the compounds showed membrane
crossing or exiting events in our MD simulations, suggesting
that these average insertion values correspond to energy
minima. It should be noted that the polarity and/or the hydrogen-donor ability of the substituent group influences the insertion depth, which decreases as the polarity (and hydrogenbonding with the lipid phosphate groups) increases, following
the order: TM34 (7 Å) > complex 4 (6 Å) > complex 1 (4 Å)
(Fig. 6B). Although these are small membrane-insertion differences, given the size of the phospholipid bilayer thickness,
they are most likely related to different membrane partition
profiles, which may help interpret the compounds’ distinct
cytotoxicity values. We implemented an Umbrella Sampling
(US) scheme coupled to MD simulations to study the complete
membrane-crossing process of TM34 and complexes 1 and 4.
This approach provided detailed structural information on the
compounds and the POPC membrane at all steps of the inser-
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Fig. 6 (A) Representation of the complexes at their preferred insertion depths. The structures correspond to conformations presenting each compound’s preferred orientation. The POPC lipid tails are shown with transparent gray sticks with the phosphorus and nitrogen atoms represented as
spheres (yellow and blue, respectively). (B) Average membrane insertion values for each compound. Insertion was calculated along the membrane
normal vector, using the average position of the phosphorus atoms of the interacting monolayer as reference. Negative values correspond to the
membrane-inserted positions, below the average phosphate region. The error bars show the standard deviation of the insertion. (C) Potential of
mean force energy profile for the three compounds studied and using the water phase as the zero-energy reference. The light blue and light gray
regions of the plot correspond to the water and membrane interior phases, respectively. The lipid phosphate group region (light pink) separates
these two phases and is located at ∼1.9 nm from the membrane center. The PMF error values were calculated from the standard error of the mean
between the three replicates. (D) Permeability coefficients (Pm) of the three compounds studied, calculated using the ISDM method. The error values
were calculated from a jackknife leave-one-out strategy using the information from the three replicates.
tion pathway (Fig. S14†). The sampling obtained for the compound positions in each umbrella is very good with significant
histogram overlap observed between them (Fig. S15†). The
membrane deformations, observed in the US protocol,
especially at more inserted umbrellas, are larger but can be
easily correlated with the needed water desolvation process
(Fig. S16 and S17†). The complexes’ angle profiles and
rotational tumbling also seem to be stable throughout the
simulations (Fig. S18–S20†). This stability is particularly
important when calculating the energetics associated with the
membrane-crossing process. We calculated the potential of
7690 | Dalton Trans., 2024, 53, 7682–7693
mean force (PMF) energy profiles of all compounds (Fig. 6C)
which confirmed their strong preference towards the membrane phase, with a clear energy minimum located deep below
the average phosphorous region (umbrellas 1.3–1.4). The
energy barrier for membrane crossing (the difference between
the minimum and the maximum profiles at the membrane
center) is significant, which agrees with the fact that we did
not observe membrane-crossing events in the unrestrained MD
simulations of these compounds. Despite having very similar
PMF profiles, we still observed that complex 1 has a slightly
higher energy barrier, its hydrazide substitution can establish
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more stabilizing interactions with the lipid headgroups. This
is also in line with its smaller average insertion value, obtained
from unrestrained MD. The membrane permeability coefficients (Pm) were calculated using the ISDM formalism
(Fig. 6D) where the POPC bilayer is considered symmetrical so
that the resulting PMF energy profiles can be duplicated.
Although the absolute values of Pm cannot be directly compared with those observed in cells,80 their relative differences
can provide strong hints on the membrane crossing abilities of
each compound. We observed that complex 1 has a smaller Pm
than TM34, which is in agreement with its structural properties and PMF energy profile. Finally, it should be noted that
these complexes are cations and their calculated Pm values are
still remarkably high and comparable with most hydrophobic
drugs.81–83
Conclusions
Four novel ruthenium–peptide conjugates RuPC1–RuPC4 were
synthesized by combining an FGFR-targeting peptide, a cytotoxic Ru–cyclopentadienyl complex, and a pH-sensitive linker.
These bi-functional RuPCs were rationally designed to selectively target FGFR-positive breast cancer cells and release
in situ the cytotoxic Ru complex in a controlled way, promoting
the inhibition of cancer cells with reduced side cytotoxicity to
normal cells. The cytotoxicity of all RuPCs is correlated with
the level of FGFR expression, and the conjugates presented
selectivity for FGFR(+) breast cancer cell lines compared to
normal fibroblasts. Importantly, the cytotoxicity and drug
release profiles of the RuPCs were shown to be strongly dependent on the peptide conjugation position in the Ru complex
and on the chemical environment around the hydrazone
bond. It was possible to identify a lead bi-functional RuPC that
holds the potential as an FGFR-targeted chemotherapeutic
agent. This RuPC is sufficiently stable at neutral pH with a
small percentage of drug release, and it achieves fast and
almost complete drug release under mildly acidic conditions,
such as ones found in tumor microenvironment. These promising results encourage us to further investigate these bi-functional RuPCs as a novel platform for targeted chemotherapy of
FGFR-positive breast cancers. Some modifications in the structure of the conjugates, such as the use of other pH-responsive
linkers and the position of conjugation of the Ru complex in
the peptide sequence should be explored to obtain better
therapeutic windows.
Author contributions
Conceptualization: T. S. M.; funding acquisition: T. S. M.,
J. D. G. C., F. M., F. M., M. M., M. A. J.; investigation: J. F. M.,
M. S., I. P., M. T. S., F. M., J. A. S. C., F. M., M. F. M. P., M. A. J.,
T. S. M.; methodology: T. S. M., J. D. G. C.; validation, T. S. M.,
J. D. G. C.; writing – original draft preparation: J. F. M., M. S.,
I. P., F. M., J. A. S. C., F. M., M. F. M. P., M. M., M. A. J.,
This journal is © The Royal Society of Chemistry 2024
Paper
J. D. G. C., T. S. M.; project administration: T. S. M.; supervision: T. S. M., J. D. G. C.; writing – review & editing: F. M.,
J. A. S. C., F. M., M. F. M. P., M. M., M. A. J., M. H. G.,
J. D. G. C., T. S. M. All authors have read and agreed to the
published version of the manuscript.
Conflicts of interest
The authors declare no competing financial interests.
Acknowledgements
We thank the Fundação para a Ciência e Tecnologia (FCT), I.
P./MCTES for the financial support through the projects
PTDC/QUI-QIN/0146/2020, PTDC/QUI-OUT/3854/2021, UIDB/
00100/2020 (CQE), LA/P/0056/2020 (IMS), UIDB/04046/2020,
UIDP/04046/2020 (BioISI), UID/Multi/04349/2019 (C2TN), and
for doctoral grant SFRH/BD/135915/2018 (J. F. M.), UI/BD/
154814/2023 (M. S.) and 2023.01155.BD (I.P.). FCT, POPH and
FSE – European Social Funds are acknowledged for the
Individual Call to Scientific Employment Stimulus projects
2022/00028/CEECIND (T. S. M.), 2020/02383/CEECIND
(J. A. S. C.) and CEECIND/02300/2017 (M. M.) Work at
IQF-CSIC was supported by grant PID2020-112821GB-I00 from
MCINN/AEI/10.13039/501100011033 to M. A. J. 3D-NMR experiments were performed at the Manuel Rico NMR Laboratory
(LMR) of the Spanish National Research Council (CSIC), a
node of the Spanish Large-Scale National Facility (ICTS
R-LRB).
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